PerturBench evaluation of CPA* (scGPT) on combination prediction on Norman19, RMSE mean rank, scored with RMSE mean rank.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CPA* (scGPT) | Task: PerturBench CB-RMSE-RANK: combination prediction on Norman19, RMSE mean rank Dataset subset: Norman19 (PerturBench split) | 0.13 ± 2 × 10 − 2 Perturbench RMSE rank fraction · lower Uncertainty: SD 0.02 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCPA* (scGPT) on PerturBench CB-RMSE-RANK: combination prediction on Norman19, RMSE mean rank Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds. Aggregation: Not reported PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis · Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) |
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Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds.
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: metric implementation RMSE mean rank Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id perturbench-task-cb-rmse-rank Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Origin author_reported Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Protocol Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds. Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description PerturBench evaluation of CPA* (scGPT) on combination prediction on Norman19, RMSE mean rank, scored with RMSE mean rank. Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: assessment perturbench-task-cb-rmse-rank Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: data perturbench-dataset-norman19 Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: system perturbench-method-cpa-scgpt Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name CPA* (scGPT) on PerturBench CB-RMSE-RANK: combination prediction on Norman19, RMSE mean rank Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(CPA ∗ (scGPT)), column(RMSE, mean rank) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: perturbench-evaluation-cpa-scgpt-cb-rmse-rank