Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
1 evaluation · 4 results. Different protocols are not a single leaderboard.
Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) · Dataset: E. coli sigma70 promoter dataset
Sorted by Accuracy (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Accuracy | MCC | Recall | Specificity |
|---|---|---|---|---|
| iPromoter-2LEvaluation | 0.64 | 0.37 | 0.94 | 0.37 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: iPromoter-2L | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.64 Accuracy unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceiPromoter-2L: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Accuracy; XML row8 column2 |
| Configuration: iPromoter-2L | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.37 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceiPromoter-2L: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column MCC; XML row8 column3 |
| Configuration: iPromoter-2L | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.37 Specificity fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceiPromoter-2L: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Specificity; XML row8 column5 |
| Configuration: iPromoter-2L | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.94 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceiPromoter-2L: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row iPromoter-2L, column Sensitivity; XML row8 column4 |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified
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Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: aggregation Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: budget Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: dataset version Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: inputs Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: metric implementation Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: population Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id paper-protocol-94fa3494d41bcd98d2 Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: split 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: subset E. coli sigma70 independent promoter test Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: needs review
Stable ID: paper-evaluation-c1a3a1fb09adecf024