Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
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1 evaluation · 4 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Sigma70Pred | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.66 Accuracy unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSigma70Pred: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row Sigma70Pred, column Accuracy; XML row14 column2 |
| Configuration: Sigma70Pred | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.41 Specificity fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSigma70Pred: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row Sigma70Pred, column Specificity; XML row14 column5 |
| Configuration: Sigma70Pred | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.95 Sensitivity fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSigma70Pred: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row Sigma70Pred, column Sensitivity; XML row14 column4 |
| Configuration: Sigma70Pred | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.42 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSigma70Pred: E. coli sigma70 independent promoter test Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row Sigma70Pred, column MCC; XML row14 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
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Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-94fa3494d41bcd98d2 Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset E. coli sigma70 independent promoter test Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Accuracy, E. coli sigma70 independent promoter test Version: PMC10810988.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-evaluation-0f6b8298967a5becc2