rewire.itbenchmarks
Evaluation

MPNN: SugarBase taxonomy · Family

Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: MPNNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)
Dataset: SugarBase taxonomy · Family
41.60(0.64)% accuracy
percent · higher

Uncertainty: type: standard_deviation; value: 0.64; n: 3; unit: same_as_metric

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

MPNN: SugarBase taxonomy · Family

Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.

Aggregation: Not reported

GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row MPNN, column Family

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.

Configuration
MPNN
Protocol
SugarBase taxonomy · Family (GlycanML taxonomy prediction)
Dataset
SugarBase taxonomy · Family
origin
Author-reported evaluation
configuration
MPNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
protocol id
paper-protocol-8dca9eabea26dee766
dataset version
Not reported
split
SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.
subset
Not reported
population
train validation test: 11010; 1280; 919; note: Dataset split sizes, not per-model scored counts.
aggregation
Mean and standard deviation across seeds 0, 1, 2.
inputs
Not reported
adaptation
MPNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
budget
Not reported
metric implementation
Not reported

Metadata review: needs review. Unreported conditions prevent automatic comparisons.

Reproduction

Split
SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.
Adaptation
MPNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

20 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.adaptation
MPNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.aggregation
Mean and standard deviation across seeds 0, 1, 2.
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.budget
Not reported
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.dataset_version
Not reported
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.inputs
Not reported
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.metric_implementation
Not reported
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.population.note
Dataset split sizes, not per-model scored counts.
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.population.note

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.population.train_validation_test
3 values
  • 11010
  • 1280
  • 919
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.population.train_validation_test

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.protocol_id
paper-protocol-8dca9eabea26dee766
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.split
SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.
Context-only references
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning

Original source ↗

Table 3, p. 8, Family

Version: arXiv:2405.16206v1, 2024-05-25
Retrieved: 2026-09-16T21:04:56.017006+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: 9ba3db678b4550898a612b42e8832bf9dee40935090fc4d969ba8f6ac5106979

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: needs review

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: paper-evaluation-0796fb126697460eaa

areas
glycomics
origin
author_reported
protocol
Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.
version
MPNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
comparison
protocol id: paper-protocol-8dca9eabea26dee766; dataset version: Not reported; split: SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1.; subset: Not reported; population: train validation test: 11010; 1280; 919; note: Dataset split sizes, not per-model scored counts.; aggregation: Mean and standard deviation across seeds 0, 1, 2.; inputs: Not reported; adaptation: MPNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings; budget: Not reported; metric implementation: Not reported
source locator
Table 3, p. 8, Family
missing metadata
checkpoint revision: unextracted; budget: unreported; split manifest: unextracted
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