MSAlign molecular retrieval evaluation of MSAlign on MassSpecGym formula split retrieval with no formula, scored with Recall@5.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: MSAlign | Protocol: MSAlign molecular retrieval MassSpecGym formula split: no formula, R@5: MassSpecGym formula split retrieval with no formula Dataset subset: MassSpecGym formula split, no formula candidate pool (MSAlign molecular retrieval split) | 73.1% recall_at_5 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSection 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted.
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15 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Author-trained/evaluated retrieval models under the settings in Section 5.1. Candidate sets are kept distinct by dataset, split and whether the molecular formula is supplied. Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.metric_implementation Recall@5 Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.comparison.protocol_id msalign-2026-table3-task-massspecgym-formula-split-no-formula-r-5 Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.evaluation_group_id msalign-2026-table3-method-msalign-msalign-2026-table3-dataset-massspecgym-formula-split-no-formula-candidate-pool-evaluation-setup Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.evidence_overlap Complete Table 3 of one paper; dataset/split/input groups are not independent replications of a common protocol. Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.origin author_reported Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.protocol Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.published_score_reproduction false Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.source_locator Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.suite_complete false Context-only references | msalign: Primary paper PDF Table 3, MassSpecGym formula split, row R@5, column 8 (MSAlign) Version: 2605.19752v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: msalign-2026-table3-evaluation-msalign-massspecgym-formula-split-no-formula-r-5