mRNABench variant probes evaluation of supervised-cnn on Gene Ontology term prediction, scored with AUPRC.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: supervised-cnn | Protocol: mRNABench variant probes GO: Gene Ontology term prediction Dataset subset: mRNABench GO (mRNABench split) | 0.155 ± 0.002 AUPRC fraction · higher Uncertainty: 95% CI ± 0.002 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcesupervised-cnn on mRNABench variant probes GO: Gene Ontology term prediction Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn |
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Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics.
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13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Adaptation Supervised CNN trained ab initio; not a frozen language model. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: metric implementation AUPRC Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id mrnabench-variants-2025-task-go Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Evidence experiment set id mrnabench-2025-linear-probing-default-splits Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Evidence overlap Same paper experiment set: mrnabench-2025-linear-probing-default-splits. Table 2 selects a best-overall variant per family from these measurements. Do not count the summary and per-variant tables as independent evidence. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Origin author_reported Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Protocol Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description mRNABench variant probes evaluation of supervised-cnn on Gene Ontology term prediction, scored with AUPRC. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: assessment mrnabench-variants-2025-task-go Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 6 (XML T3), data row 44, XML tr 46, column 5 (GO | AUPRC), model supervised-cnn Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: mrnabench-variants-2025-evaluation-supervised-cnn-go