Published inference benchmark; transcribed, not reproduced.
1 evaluation · 4 results. Different protocols are not a single leaderboard.
Protocol: GenomeOcean-4B autoregressive generation throughput, power, energy efficiency and perplexity, BF16 versus FP8 (Yu et al. 2026 Table 4) · Dataset: 96 GTDB Bacteria genome sequences bounded to 102,400 tokens (Yu et al. 2026)
Sorted by Energy efficiency (Autoregressive generation; generated tokens per second per watt) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Energy efficiency (Autoregressive generation; generated tokens per second per watt) | Inference throughput (Autoregressive generation; generated tokens per second) | Perplexity (Sliding-window perplexity on 96 GTDB Bacteria sequences (10,240-token context, 2,560-token stride)) | Power draw (Autoregressive generation; mean steady-state GPU power from NVML) |
|---|---|---|---|---|
| GenomeOcean-4B, BF16, vLLM generation (Yu et al. 2026)Evaluation | 2.63 ± 0.01 | 1818.79 ± 7.95 | 125.97 ± 1.04 | 692.40 ± 1.88 |
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation None (pretrained checkpoint, post-training quantization only) Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: aggregation Mean and standard deviation over five trials Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: budget One NVIDIA H100 SXM5 80 GB GPU Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: dataset version Not reported Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: inputs Tokenized DNA sequence Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: metric implementation Not reported Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: population GTDB bacterial genomes Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: protocol id model-execution-20261011-protocol-yu2026-genomeocean-generation-fp8 Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Comparison: split Five trials, seeds 42-46; perplexity on 96 fixed sequences Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
| Origin author_reported Context-only references | FP8 Inference in Genomic Foundation Models: Theoretical vs. Realized Speedups on GenomeOcean Table 4 row 'Baseline BF16' Version: bioRxiv preprint version 1, posted 2026-08-14 (PDF footer); bioRxiv API date 2026-08-18 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: bioRxiv stamps each PDF download, so artifact_sha256 describes one retrieval (a second download differed in 40 bytes). The pdftotext -layout text layer (poppler) of both downloads has SHA-256 bec6e695ce46c4ebd6692e01a1a93167e212dffbb97b6558f1da88b1eb453501. |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: model-execution-20261011-eval-yu2026-genomeocean-4b-bf16-vllm