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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AlphaFold 3 (LiPP evaluation) | Protocol: LiPP Table 2: lipid pose all-atom RMSD below 2 Angstrom, PoseBusters v2 Dataset: PoseBusters v2 (308 protein-small molecule complexes) | †80.5 {75.6–84.8}% Ligand RMSD under 2a rate (ligand pose RMSD below 2 Angstrom, as reported in the cited literature; PoseBusters v2) percent · higher Uncertainty: 95% CI 75.6 to 84.8. Exact binomial interval (table footnote a: 'lower and upper bounds of the 95% confidence intervals calculated with exact binomial distribution') Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceAlphaFold 3 on PoseBusters v2 (lipid pose all-atom RMSD below 2 Angstrom) lit-structure-20261011-lipp-protocol-rmsd-posebusters-v2-308 Aggregation: Not reported The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods · Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' |
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LiPP Table 2: lipid pose all-atom RMSD below 2 Angstrom, PoseBusters v2
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation None; tools run as released Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: aggregation Share of complexes counted as successful Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: budget Not reported Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: dataset version Not reported Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: inputs Protein sequence or structure and the bound lipid or small molecule Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: metric implementation lipid pose all-atom RMSD below 2 Angstrom Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: population 308 complexes Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id lit-structure-20261011-lipp-protocol-rmsd-posebusters-v2-308 Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: split PoseBusters v2 Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Limitations1 values
| The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 2, row 'AlphaFold 3', column 'PoseBusters v2 (N = 308) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-structure-20261011-lipp-eval-rmsd-posebusters-v2-308-alphafold-3