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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DiffDock-L (LiPP evaluation) | Protocol: LiPP Table 3: RMSD below 2 Angstrom and PoseBusters valid, LiPP test set Dataset: LiPP test set (36 complexes released after every tool's cutoff) | 8.3 {1.7–22.4}% Success rate (RMSD below 2 Angstrom and PoseBusters valid; LiPP test set) percent · higher Uncertainty: 95% CI 1.7 to 22.4. Exact binomial interval (table footnote a: 'lower and upper bounds of the 95% confidence intervals calculated with exact binomial distribution') Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDiffDock-L on LiPP test set (RMSD below 2 Angstrom and PoseBusters valid) lit-structure-20261011-lipp-protocol-pb-valid-lipp-test-36 Aggregation: Not reported The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods · Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified
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LiPP Table 3: RMSD below 2 Angstrom and PoseBusters valid, LiPP test set
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation None; tools run as released Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: aggregation Share of complexes counted as successful Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: budget Not reported Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: dataset version Not reported Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: inputs Protein sequence or structure and the bound lipid or small molecule Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: metric implementation RMSD below 2 Angstrom and PoseBusters valid Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: population 36 complexes Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id lit-structure-20261011-lipp-protocol-pb-valid-lipp-test-36 Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: split LiPP test set Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Origin independent_paper Context-only references | The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Table 3, row 'DiffDock-L', column 'LiPP test set (N = 36) % Success Rate' Version: PMC13292216.1 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-structure-20261011-lipp-eval-pb-valid-lipp-test-36-diffdock-l