Evaluation

Prot-T5 resource usage on DeepProtein Human PPI (PEER) (Time (hour))

Published comparison transcribed from the pinned source; not reproduced.

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Prot-T5 (DeepProtein benchmark)	Protocol: DeepProtein Human PPI (PEER): Time (hour) Dataset: Human PPI (PEER)	0.0032 Runtime (training wall-clock time) hour · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Evidence concern: excluded from comparisons Figure 3's caption calls the regression metric 'Spearman (Pearson) Coefficient' while the Evaluation metrics section defines rho as Spearman rank correlation and R2 separately. The section's definition is taken as authoritative and the rho columns are recorded as Spearman; the caption wording is noted so a reader of the figure is not surprised.DeepProtein: deep learning library and benchmark for protein sequence learning · Tables 2, 4 and 6 column headings 'rho' and 'R2'; Figure 3 caption Methods, coverage and source Prot-T5 resource usage on DeepProtein Human PPI (PEER) (Time (hour)) lit-protein-20261011-deepprotein-protocol-human-ppi-time Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

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Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

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Evaluation procedure

DeepProtein Human PPI (PEER): Time (hour)

Configuration: Prot-T5 (DeepProtein benchmark)
Protocol: DeepProtein Human PPI (PEER): Time (hour)
Dataset: Human PPI (PEER)

origin: Author-reported evaluation
configuration: Primary source as retrieved 2026-10-11
protocol id: lit-protein-20261011-deepprotein-protocol-human-ppi-time
dataset version: Not reported
split: 6844/277/227
population: train/valid/test 6844/277/227
inputs: Amino-acid sequence (graph models also take the protein graph)
adaptation: Trained on the task's training split with the DeepProtein default configuration
metric implementation: training wall-clock time
aggregation: Single reported figure per dataset and model
budget: Not reported

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split: 6844/277/227
Adaptation: Trained on the task's training split with the DeepProtein default configuration
Scoring implementation: training wall-clock time

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

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19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Comparison: adaptation Trained on the task's training split with the DeepProtein default configuration Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: aggregation Single reported figure per dataset and model Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: budget Not reported Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: dataset version Not reported Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: inputs Amino-acid sequence (graph models also take the protein graph) Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: metric implementation training wall-clock time Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: population train/valid/test 6844/277/227 Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.population` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: protocol id lit-protein-20261011-deepprotein-protocol-human-ppi-time Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: split 6844/277/227 Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Limitations 1 values Table 8 does not say which hardware or how many runs the figure covers. Context-only references	DeepProtein: deep learning library and benchmark for protein sequence learning Original source ↗ Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) Retrieved: 2026-10-11T21:30:00Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.limitations` Source artifact SHA-256: `b586921363170806d9f332afb37762ea61f464da6067a3ef0ab8853281964b7f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

DeepProtein: deep learning library and benchmark for protein sequence learning · Original source · Version of record, Bioinformatics 2025 (PMC12553333 JATS full text)

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Technical metadata and extraction receipts

Stable ID: lit-protein-20261011-deepprotein-eval-human-ppi-time-prot-t5

areas: protein-function
contexts: research
origin: author_reported
protocol: lit-protein-20261011-deepprotein-protocol-human-ppi-time
version: Primary source as retrieved 2026-10-11
comparison: protocol id: lit-protein-20261011-deepprotein-protocol-human-ppi-time; dataset version: Not reported; split: 6844/277/227; population: train/valid/test 6844/277/227; inputs: Amino-acid sequence (graph models also take the protein graph); adaptation: Trained on the task's training split with the DeepProtein default configuration; metric implementation: training wall-clock time; aggregation: Single reported figure per dataset and model; budget: Not reported
source locator: Table 8 row 'Human-PPI' / 'Prot-T5', column 'Time (hour)'
missing metadata: comparison.budget: reason: unreported; comparison.dataset version: reason: unreported
limitations: Table 8 does not say which hardware or how many runs the figure covers.

Related records

system: Prot-T5 (DeepProtein benchmark)
assessment: DeepProtein Human PPI (PEER): Time (hour)
data: Human PPI (PEER)
evaluation: Prot-T5 Human PPI (PEER) Time (hour)

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