Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Graphormer (DeepProtein benchmark) | Protocol: DeepProtein Fluorescence (TAPE): MAE ↓ Dataset: Fluorescence (TAPE) | 1.201 ± 0.032 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.032 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGraphormer on DeepProtein Fluorescence (TAPE) (MAE ↓) lit-protein-20261011-deepprotein-protocol-fluorescence-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
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Missing or unresolved evidence
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A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
DeepProtein Fluorescence (TAPE): MAE ↓
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
20 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Trained on the task's training split with the DeepProtein default configuration Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Mean over five random seeds Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Not reported Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Amino-acid sequence (graph models also take the protein graph) Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation mean absolute error Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population train/valid/test 21446/5362/27217 Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id lit-protein-20261011-deepprotein-protocol-fluorescence-mae Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split 21446/5362/27217 Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| N runs 5 Context-only references | DeepProtein: deep learning library and benchmark for protein sequence learning Table 2. row 'Graphormer', column group 'Fluorescence', column 'MAE ↓' Version: Version of record, Bioinformatics 2025 (PMC12553333 JATS full text) | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-protein-20261011-deepprotein-eval-fluorescence-mae-graphormer