Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 4 results. Different protocols are not a single leaderboard.
Protocol: PerturBench v4 mode-collapse diagnostics on Srivatsan20 · Dataset subset: Srivatsan20 (PerturBench v4 covariate-transfer split)
Sorted by Perturbench matrix distance (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Perturbench matrix distance | Perturbench RMSE of mean | Perturbench RMSE rank | Perturbench RMSE transposed rank |
|---|---|---|---|---|
| CPA* (noAdv)Evaluation | 32.2 | 0.021 | 0.098 | 0.337 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CPA* (noAdv) | Protocol: PerturBench v4 mode-collapse diagnostics on Srivatsan20 Dataset subset: Srivatsan20 (PerturBench v4 covariate-transfer split) | 32.2 Perturbench matrix distance unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCPA ∗ (noAdv) on PerturBench v4 srivatsan20-collapse lit-cells-networks-20261011-perturbench-v4-protocol-srivatsan20-mode-collapse Aggregation: Not reported PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) · Table 12, row 'CPA ∗ (noAdv)', column 'Matrix distance' |
| Configuration: CPA* (noAdv) | Protocol: PerturBench v4 mode-collapse diagnostics on Srivatsan20 Dataset subset: Srivatsan20 (PerturBench v4 covariate-transfer split) | 0.098 Perturbench RMSE rank fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCPA ∗ (noAdv) on PerturBench v4 srivatsan20-collapse lit-cells-networks-20261011-perturbench-v4-protocol-srivatsan20-mode-collapse Aggregation: Not reported PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) · Table 12, row 'CPA ∗ (noAdv)', column 'RMSE mean rank' |
| Configuration: CPA* (noAdv) | Protocol: PerturBench v4 mode-collapse diagnostics on Srivatsan20 Dataset subset: Srivatsan20 (PerturBench v4 covariate-transfer split) | 0.021 Perturbench RMSE of mean unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCPA ∗ (noAdv) on PerturBench v4 srivatsan20-collapse lit-cells-networks-20261011-perturbench-v4-protocol-srivatsan20-mode-collapse Aggregation: Not reported PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) · Table 12, row 'CPA ∗ (noAdv)', column 'RMSE mean' |
| Configuration: CPA* (noAdv) | Protocol: PerturBench v4 mode-collapse diagnostics on Srivatsan20 Dataset subset: Srivatsan20 (PerturBench v4 covariate-transfer split) | 0.337 Perturbench RMSE transposed rank fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCPA ∗ (noAdv) on PerturBench v4 srivatsan20-collapse lit-cells-networks-20261011-perturbench-v4-protocol-srivatsan20-mode-collapse Aggregation: Not reported PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) · Table 12, row 'CPA ∗ (noAdv)', column 'RMSE mean transposed-rank' |
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PerturBench v4 mode-collapse diagnostics on Srivatsan20
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Trained from scratch per dataset with HPO Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: aggregation Not reported Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: budget Optuna HPO, at least 60 trials Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: dataset version Not reported Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: inputs Control cells with matched covariates and perturbation identity Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: metric implementation PerturBench evaluation module (Section 4.2) Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: population Not reported Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: protocol id lit-cells-networks-20261011-perturbench-v4-protocol-srivatsan20-mode-collapse Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Comparison: split Srivatsan20 sci-Plex chemical perturbations in three cell lines (A549, K562, MCF-7), split by PerturBench v4 to test transfer to a held-out cell line. Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
| Origin author_reported Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Table 12, row 'CPA ∗ (noAdv)' Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: lit-cells-networks-20261011-perturbench-v4-eval-srivatsan20-collapse-cpa-noadv