| Comparison: adaptation None; pretrained models and the published docking receptor Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.adaptation Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: aggregation Pooled over the compounds of one target's tested list Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.aggregation Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: budget Not reported Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | missing or unspecified No individual claim review recorded author reported Audit detailsField: attributes.comparison.budget Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: dataset version Tested compounds and measured potencies as provided in Supplementary file 5 Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.dataset_version Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: inputs Ligand SMILES and the protein sequence for the co-folding scores; the ligand SMILES and the receptor structure for DOCK3.7 Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.inputs Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: metric implementation Area under the receiver operating characteristic curve for separating true hits from non-binders, printed as a percentage Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.metric_implementation Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: population 506 tested compounds from a 490-million molecule screen: 201 true hits and 305 non-binders Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.population Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: protocol id hitdisc-20261022-protocol-kim-sigma2 Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.protocol_id Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Comparison: split Whole tested list; no training or test split applies Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.comparison.split Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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| Interpretation The compounds were all synthesised and assayed, but the score comparison is a retrospective re-ranking of that tested set rather than a new prospective screen. Context-only references | Kim, Correy, Hall et al. 2026, eLife 15:RP110475 (Europe PMC full text) Original source ↗ Results 'Co-folding struggles to reliably re-rank docking hit lists', paragraph on the sigma-2 dataset Version: PMC13657626 (eLife 2026;15:RP110475, version of record published 2026-10-12) Retrieved: 2026-10-22T11:52:32Z | not individually reviewed No individual claim review recorded author reported Audit detailsField: attributes.interpretation Source artifact SHA-256: 9be510b7b0cc152ff56a03c96877bf06b6a6bdeffdb4baecf8e999a6bf155aa6 Hash scope: Hash scope not separately documented; inspect source record |
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