rewire.itbenchmarks
Evaluation

ResNet50 on HEST-Benchmark LYMPH_IDC: Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma

HEST-Benchmark evaluation of ResNet50 on Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma, scored with Pearson correlation.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

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  • metric replay: verification is missing

Verified: Not verified

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  • artifact hashes: verification is missing
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  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

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Verified: Not verified

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Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: ResNet50Task: HEST-Benchmark LYMPH_IDC: Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma
Dataset subset: HEST-Benchmark LYMPH_IDC (HEST-Benchmark split)
0.205 ±0.05 pearson_r
correlation · higher

Uncertainty: type: standard_deviation; value: 0.05

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ResNet50 on HEST-Benchmark LYMPH_IDC: Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma

Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients.

Aggregation: Not reported

HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis · Table 1, row(LYMPH_IDC), column(ResNet50)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients.

Configuration
ResNet50
Task
HEST-Benchmark LYMPH_IDC: Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma
Dataset subset
HEST-Benchmark LYMPH_IDC (HEST-Benchmark split)
origin
Author-reported evaluation
configuration
Not reported
protocol id
hest-task-lymph-idc
metric implementation
Pearson correlation

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
Pearson correlation

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

10 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.metric_implementation
Pearson correlation
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.protocol_id
hest-task-lymph-idc
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.origin
author_reported
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.origin

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.protocol
Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients.
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.protocol

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.source_locator
Table 1, row(LYMPH_IDC), column(ResNet50)
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

description
HEST-Benchmark evaluation of ResNet50 on Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma, scored with Pearson correlation.
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: description

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: benchmark
hest-task-lymph-idc
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:benchmark:hest-task-lymph-idc

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: dataset
hest-dataset-hest-benchmark-lymph-idc
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:dataset:hest-dataset-hest-benchmark-lymph-idc

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: model
hest-method-resnet50
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:model:hest-method-resnet50

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name
ResNet50 on HEST-Benchmark LYMPH_IDC: Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma
Context-only references
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Original source ↗

Table 1, row(LYMPH_IDC), column(ResNet50)

Version: Version pinned by URL and artifact SHA256 when available
Retrieved: 2026-09-16

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: name

Source artifact SHA-256: 636099a73dee8337f60e6e9120230b914605b35553872ddf76e4661bbe14be9b

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: hest-evaluation-resnet50-lymph-idc

areas
cells-tissues
tasks
Gene expression prediction from histology, Lymph node metastasis of invasive ductal carcinoma
origin
author_reported
protocol
Random Forest regression with 70 trees over frozen patch features, averaged over folds or patients.
comparison
protocol id: hest-task-lymph-idc; metric implementation: Pearson correlation
missing metadata
checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
source locator
Table 1, row(LYMPH_IDC), column(ResNet50)
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