Evaluation

HyenaDNA 436K pretraining compute (HyenaDNA Table A.2)

Evidence concern: excluded from comparisons

Table A.2 GPU-hours for the DNABERT and Nucleotide Transformer columns do not equal the GPUs × wall clock printed in the same table: 8 GPUs × 25 days is 4,800 GPU-hours against 12,000 printed, and 128 GPUs × 28 days is 86,016 GPU-hours against 215,000 printed, both about 2.5 times higher. The HyenaDNA columns agree (1 GPU × 80 min, about 1.3 GPU-hours). The Nucleotide Transformer article (Methods 'Hardware') also gives 128 A100 GPUs for 28 days. The table cites no source for these columns. Values are kept as printed and should not be compared until the discrepancy is resolved.HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Table A.2 (page 17), rows 'GPUs', 'Wall clock' and 'GPU-hrs', columns 'DNABERT' and 'Nucleotide Transformer'

Published result; transcribed, not reproduced.

Evaluation results

1 evaluation · 2 results. Different protocols are not a single leaderboard.

Protocol: Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2) · Dataset: Pretraining corpora of the models in HyenaDNA Table A.2

Sorted by Accelerator time (Pretraining, total) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Accelerator time (Pretraining, total)	Runtime (Pretraining, wall clock)
HyenaDNA 436K pretraining (HyenaDNA Table A.2)Evaluation	1.3	80

All 2 result rows with coverage, uncertainty and sources

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: HyenaDNA 436K pretraining (HyenaDNA Table A.2)	Protocol: Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2) Dataset: Pretraining corpora of the models in HyenaDNA Table A.2	1.3 Accelerator time (Pretraining, total) hour · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Evidence concern: excluded from comparisons Table A.2 GPU-hours for the DNABERT and Nucleotide Transformer columns do not equal the GPUs × wall clock printed in the same table: 8 GPUs × 25 days is 4,800 GPU-hours against 12,000 printed, and 128 GPUs × 28 days is 86,016 GPU-hours against 215,000 printed, both about 2.5 times higher. The HyenaDNA columns agree (1 GPU × 80 min, about 1.3 GPU-hours). The Nucleotide Transformer article (Methods 'Hardware') also gives 128 A100 GPUs for 28 days. The table cites no source for these columns. Values are kept as printed and should not be compared until the discrepancy is resolved.HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Table A.2 (page 17), rows 'GPUs', 'Wall clock' and 'GPU-hrs', columns 'DNABERT' and 'Nucleotide Transformer' Methods, coverage and source HyenaDNA 436K pretraining compute (HyenaDNA Table A.2) gfm-guide-20261014-protocol-hyenadna-pretraining-compute Aggregation: Not reported HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Table A.2 (page 17), row 'GPU-hrs', column 3 of 4 ('HyenaDNA', 436K)
Configuration: HyenaDNA 436K pretraining (HyenaDNA Table A.2)	Protocol: Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2) Dataset: Pretraining corpora of the models in HyenaDNA Table A.2	80 Runtime (Pretraining, wall clock) minute · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Evidence concern: excluded from comparisons Table A.2 GPU-hours for the DNABERT and Nucleotide Transformer columns do not equal the GPUs × wall clock printed in the same table: 8 GPUs × 25 days is 4,800 GPU-hours against 12,000 printed, and 128 GPUs × 28 days is 86,016 GPU-hours against 215,000 printed, both about 2.5 times higher. The HyenaDNA columns agree (1 GPU × 80 min, about 1.3 GPU-hours). The Nucleotide Transformer article (Methods 'Hardware') also gives 128 A100 GPUs for 28 days. The table cites no source for these columns. Values are kept as printed and should not be compared until the discrepancy is resolved.HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Table A.2 (page 17), rows 'GPUs', 'Wall clock' and 'GPU-hrs', columns 'DNABERT' and 'Nucleotide Transformer' Methods, coverage and source HyenaDNA 436K pretraining compute (HyenaDNA Table A.2) gfm-guide-20261014-protocol-hyenadna-pretraining-compute Aggregation: Not reported HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Table A.2 (page 17), row 'Wall clock', column 3 of 4 ('HyenaDNA', 436K)

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

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Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

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Evaluation procedure

Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2)

Configuration: HyenaDNA 436K pretraining (HyenaDNA Table A.2)
Protocol: Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2)
Dataset: Pretraining corpora of the models in HyenaDNA Table A.2

origin: Author-reported evaluation
configuration: Primary source as retrieved 2026-10-14
dataset version: Not reported
split: Not applicable
population: Not reported
inputs: DNA sequence
adaptation: Pretraining from scratch
metric implementation: Not reported
aggregation: Total per run
budget: Not reported
protocol id: gfm-guide-20261014-protocol-hyenadna-pretraining-compute

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split: Not applicable
Adaptation: Pretraining from scratch
Scoring implementation: Not reported

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Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Comparison: adaptation Pretraining from scratch Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: aggregation Total per run Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: budget Not reported Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: dataset version Not reported Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: inputs DNA sequence Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: metric implementation Not reported Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: population Not reported Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.population` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: protocol id gfm-guide-20261014-protocol-hyenadna-pretraining-compute Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: split Not applicable Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Origin author_reported Context-only references	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 Original source ↗ Table A.2 (page 17) Version: arXiv 2306.15794v2 Retrieved: 2026-10-14T12:48:26Z	not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.origin` Source artifact SHA-256: `2f471549352ff571ac55faa80c8da453f9bf1ff5b01b6b87fa893457828e798c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Original source · arXiv 2306.15794v2

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Technical metadata and extraction receipts

Stable ID: gfm-guide-20261014-eval-hyenadna-table-a2-hyenadna-436k-pretraining

areas: dna-genomes
contexts: research
origin: author_reported
protocol: gfm-guide-20261014-protocol-hyenadna-pretraining-compute
version: Primary source as retrieved 2026-10-14
comparison: dataset version: Not reported; split: Not applicable; population: Not reported; inputs: DNA sequence; adaptation: Pretraining from scratch; metric implementation: Not reported; aggregation: Total per run; budget: Not reported; protocol id: gfm-guide-20261014-protocol-hyenadna-pretraining-compute
source locator: Table A.2 (page 17)
missing metadata: comparison.budget: reason: unreported; comparison.dataset version: reason: unreported; comparison.metric implementation: reason: unreported; comparison.population: reason: unreported
training hardware: 1 × NVIDIA A100 40GB

Related records

system: HyenaDNA 436K pretraining (HyenaDNA Table A.2)
assessment: Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2)
data: Pretraining corpora of the models in HyenaDNA Table A.2
evaluation: HyenaDNA 436K pretraining GPU-hours (HyenaDNA Table A.2)
evaluation: HyenaDNA 436K pretraining wall-clock time (HyenaDNA Table A.2)

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