1 evaluation · 3 results. Different protocols are not a single leaderboard.
Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) · Dataset: GenomeOcean natural/artificial sequence test
Sorted by F1 (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | F1 | Precision | Recall |
|---|---|---|---|
| DNABERT-2Evaluation | 85.1% | 85.2% | 85% |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DNABERT-2 | Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) Dataset: GenomeOcean natural/artificial sequence test | 85.1% F1 percent · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2: Natural vs artificial microbial genome sequence DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Aggregation: Not reported GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies; GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2, DNABERT-2 row, F1 column |
| Configuration: DNABERT-2 | Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) Dataset: GenomeOcean natural/artificial sequence test | 85% Recall percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2: Natural vs artificial microbial genome sequence DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Aggregation: Not reported GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row DNABERT-2, column Recall; XML row2 column3 |
| Configuration: DNABERT-2 | Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) Dataset: GenomeOcean natural/artificial sequence test | 85.2% Precision percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2: Natural vs artificial microbial genome sequence DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Aggregation: Not reported GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row DNABERT-2, column Precision; XML row2 column2 |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified
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DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences.
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: aggregation Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: budget Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: dataset version Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: inputs Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: F1, Natural versus GenomeOcean-generated DNA classification Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: needs review
Stable ID: evaluation-lit-b3-028