rewirebio.iobenchmarks
Evaluation

baseline (BIT.UA), TREC 2020 PM Phase 1

Published comparison; transcribed, not reproduced.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-10-09-ba02f2f4a36e · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 3 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: TREC 2020 PM run baseline (BIT.UA)Protocol: TREC 2020 PM Phase 1: topical relevance of retrieved MEDLINE abstracts
Dataset: TREC 2020 Precision Medicine: 40 cancer-gene-treatment topics over a 2019 MEDLINE baseline snapshot
0.532 ndcg
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

baseline (BIT.UA), TREC 2020 PM Phase 1

egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance

Aggregation: Not reported

Overview of the TREC 2020 Precision Medicine Track; NIST TREC Browser, Precision Medicine 2020 runs page · Overview Table 5 (PDF page 9), block 'infNDCG', row 1: team 'BIT.UA', run 'baseline'
Configuration: TREC 2020 PM run baseline (BIT.UA)Protocol: TREC 2020 PM Phase 1: topical relevance of retrieved MEDLINE abstracts
Dataset: TREC 2020 Precision Medicine: 40 cancer-gene-treatment topics over a 2019 MEDLINE baseline snapshot
0.552 precision-at-10
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

baseline (BIT.UA), TREC 2020 PM Phase 1

egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance

Aggregation: Not reported

Overview of the TREC 2020 Precision Medicine Track; NIST TREC Browser, Precision Medicine 2020 runs page · Overview Table 5 (PDF page 9), block 'P@10', row 2: team 'BIT.UA', run 'baseline'
Configuration: TREC 2020 PM run baseline (BIT.UA)Protocol: TREC 2020 PM Phase 1: topical relevance of retrieved MEDLINE abstracts
Dataset: TREC 2020 Precision Medicine: 40 cancer-gene-treatment topics over a 2019 MEDLINE baseline snapshot
0.421 r-precision
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

baseline (BIT.UA), TREC 2020 PM Phase 1

egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance

Aggregation: Not reported

Overview of the TREC 2020 Precision Medicine Track; NIST TREC Browser, Precision Medicine 2020 runs page · Overview Table 5 (PDF page 9), block 'R-prec', row 2: team 'BIT.UA', run 'baseline'

Source checking is not independent reproduction. Release 2026-10-09-ba02f2f4a36e.

Evaluation procedure

egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance

Configuration
TREC 2020 PM run baseline (BIT.UA)
Protocol
TREC 2020 PM Phase 1: topical relevance of retrieved MEDLINE abstracts
Dataset
TREC 2020 Precision Medicine: 40 cancer-gene-treatment topics over a 2019 MEDLINE baseline snapshot
origin
Independent external evaluation
configuration
Primary source as retrieved 2026-10-09
protocol id
egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance
dataset version
TREC 2020 PM qrels
split
Single evaluation round (no training split)
population
31 of 40 topics scored, as each run appendix states; the overview does not say which topics were dropped or why
inputs
Topic disease, gene and treatment fields
adaptation
Not reported
metric implementation
trec_eval and sample_eval (Phase 1); NDCG@30 (Phase 2)
aggregation
Mean over topics
budget
Not reported

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Single evaluation round (no training split)
Adaptation
Not reported
Scoring implementation
trec_eval and sample_eval (Phase 1); NDCG@30 (Phase 2)

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

38 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-ba02f2f4a36e
Property and statementOriginal source and locationReview and provenance
attributes.comparison.adaptation
Not reported
Context-only references
NIST TREC Browser, Precision Medicine 2020 runs page

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: usnistgov/trec-browser commit 75ec9339eac60126b1045e5858a5ac874ea54a51
Retrieved: 2026-10-09T20:41:00Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 910bdd0f56124a8aef1638808ba6cbb393d0483fc10013fec78f1d57803635ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.adaptation
Not reported
Context-only references
Overview of the TREC 2020 Precision Medicine Track

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Proceedings of the Twenty-Ninth Text REtrieval Conference (TREC 2020), NIST Special Publication 1266; 10-page PDF
Retrieved: 2026-10-09T20:41:38Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 7951225ee5b517fac7bf5f5739c6a118182ce84a5c3f5ddd2284d85262c126c2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.aggregation
Mean over topics
Context-only references
NIST TREC Browser, Precision Medicine 2020 runs page

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: usnistgov/trec-browser commit 75ec9339eac60126b1045e5858a5ac874ea54a51
Retrieved: 2026-10-09T20:41:00Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: 910bdd0f56124a8aef1638808ba6cbb393d0483fc10013fec78f1d57803635ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.aggregation
Mean over topics
Context-only references
Overview of the TREC 2020 Precision Medicine Track

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Proceedings of the Twenty-Ninth Text REtrieval Conference (TREC 2020), NIST Special Publication 1266; 10-page PDF
Retrieved: 2026-10-09T20:41:38Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: 7951225ee5b517fac7bf5f5739c6a118182ce84a5c3f5ddd2284d85262c126c2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.budget
Not reported
Context-only references
NIST TREC Browser, Precision Medicine 2020 runs page

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: usnistgov/trec-browser commit 75ec9339eac60126b1045e5858a5ac874ea54a51
Retrieved: 2026-10-09T20:41:00Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: 910bdd0f56124a8aef1638808ba6cbb393d0483fc10013fec78f1d57803635ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.budget
Not reported
Context-only references
Overview of the TREC 2020 Precision Medicine Track

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Proceedings of the Twenty-Ninth Text REtrieval Conference (TREC 2020), NIST Special Publication 1266; 10-page PDF
Retrieved: 2026-10-09T20:41:38Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: 7951225ee5b517fac7bf5f5739c6a118182ce84a5c3f5ddd2284d85262c126c2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.dataset_version
TREC 2020 PM qrels
Context-only references
NIST TREC Browser, Precision Medicine 2020 runs page

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: usnistgov/trec-browser commit 75ec9339eac60126b1045e5858a5ac874ea54a51
Retrieved: 2026-10-09T20:41:00Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: 910bdd0f56124a8aef1638808ba6cbb393d0483fc10013fec78f1d57803635ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.dataset_version
TREC 2020 PM qrels
Context-only references
Overview of the TREC 2020 Precision Medicine Track

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Proceedings of the Twenty-Ninth Text REtrieval Conference (TREC 2020), NIST Special Publication 1266; 10-page PDF
Retrieved: 2026-10-09T20:41:38Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: 7951225ee5b517fac7bf5f5739c6a118182ce84a5c3f5ddd2284d85262c126c2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.inputs
Topic disease, gene and treatment fields
Context-only references
NIST TREC Browser, Precision Medicine 2020 runs page

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: usnistgov/trec-browser commit 75ec9339eac60126b1045e5858a5ac874ea54a51
Retrieved: 2026-10-09T20:41:00Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: 910bdd0f56124a8aef1638808ba6cbb393d0483fc10013fec78f1d57803635ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.inputs
Topic disease, gene and treatment fields
Context-only references
Overview of the TREC 2020 Precision Medicine Track

Original source ↗

Overview Table 5

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Proceedings of the Twenty-Ninth Text REtrieval Conference (TREC 2020), NIST Special Publication 1266; 10-page PDF
Retrieved: 2026-10-09T20:41:38Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: 7951225ee5b517fac7bf5f5739c6a118182ce84a5c3f5ddd2284d85262c126c2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-09-ba02f2f4a36e · Record review: source checked

2 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: egfrnsclc-20261009-eval-trec2020-pm-phase1-baseline

areas
dna-genomes
contexts
clinical_research
origin
independent_paper
protocol
egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance
version
Primary source as retrieved 2026-10-09
comparison
protocol id: egfrnsclc-20261009-protocol-trec2020-pm-phase1-relevance; dataset version: TREC 2020 PM qrels; split: Single evaluation round (no training split); population: 31 of 40 topics scored, as each run appendix states; the overview does not say which topics were dropped or why; inputs: Topic disease, gene and treatment fields; adaptation: Not reported; metric implementation: trec_eval and sample_eval (Phase 1); NDCG@30 (Phase 2); aggregation: Mean over topics; budget: Not reported
source locator
Overview Table 5
limitations
Scores computed by the track organisers on runs submitted by the participating team; the overview authors did not build the system.
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