Published taxonomic-classification comparison; transcribed, not reproduced.
1 evaluation · 12 results. Different protocols are not a single leaderboard.
Protocol: BERTax Distantly related dataset: taxonomic classification at superkingdom and phylum (Mock et al. 2022) · Dataset: BERTax Distantly related dataset (Mock et al. 2022)
Sorted by Accuracy (phylum rank; among the samples the tool classified; SI Table S2 'acc.') (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Accuracy (phylum rank; among the samples the tool classified; SI Table S2 'acc.') | Accuracy (phylum rank; among the samples the tool classified; SI Table S5; all distantly related test sequences) | Accuracy (phylum rank; among the samples the tool classified; SI Table S5; test sequences with at least one megablast hit to the training partition (removed by the filter)) | Accuracy (phylum rank; among the samples the tool classified; SI Table S5; test sequences without a megablast hit to the training partition) | Accuracy (superkingdom rank; among the samples the tool classified; SI Table S2 'acc.') | Accuracy (superkingdom rank; among the samples the tool classified; SI Table S5; all distantly related test sequences) | Accuracy (superkingdom rank; among the samples the tool classified; SI Table S5; test sequences with at least one megablast hit to the training partition (removed by the filter)) | Accuracy (superkingdom rank; among the samples the tool classified; SI Table S5; test sequences without a megablast hit to the training partition) | Macro average precision (phylum rank; macro average over classes; unclassified samples treated as random guesses) | Macro average precision (superkingdom rank; macro average over classes; unclassified samples treated as random guesses) | Proportion (phylum rank; share of test samples the tool returned a prediction for) | Proportion (superkingdom rank; share of test samples the tool returned a prediction for) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DeepMicrobes (Distantly related dataset, Mock et al. 2022)Evaluation | 42% | 42% | 47.8% | 39.9% | 68.4% | 68.4% | 81.1% | 63.2% | 36.6% | 67.3% | 100% | 100% |
Applied filters: All linked evaluations
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
57 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Reference or training data restricted to the dataset's training partition Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119, published 2022-08-26; PMC9436379 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: adaptation Reference or training data restricted to the dataset's training partition Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks (PNAS PDF) Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119 version-of-record PDF (10 pages) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: adaptation Reference or training data restricted to the dataset's training partition Context-only references | BERTax SI Appendix (pnas.2122636119.sapp.pdf) Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: SI Appendix as distributed with PMC9436379 (member pnas.2122636119.sapp.pdf of the Europe PMC supplementaryFiles ZIP) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF member, not of the ZIP (the ZIP is rebuilt per request) |
| Comparison: aggregation Macro average over classes for AveP Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119, published 2022-08-26; PMC9436379 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Macro average over classes for AveP Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks (PNAS PDF) Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119 version-of-record PDF (10 pages) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Macro average over classes for AveP Context-only references | BERTax SI Appendix (pnas.2122636119.sapp.pdf) Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: SI Appendix as distributed with PMC9436379 (member pnas.2122636119.sapp.pdf of the Europe PMC supplementaryFiles ZIP) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF member, not of the ZIP (the ZIP is rebuilt per request) |
| Comparison: budget Not reported Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119, published 2022-08-26; PMC9436379 full-text XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks (PNAS PDF) Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119 version-of-record PDF (10 pages) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | BERTax SI Appendix (pnas.2122636119.sapp.pdf) Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: SI Appendix as distributed with PMC9436379 (member pnas.2122636119.sapp.pdf of the Europe PMC supplementaryFiles ZIP) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the PDF member, not of the ZIP (the ZIP is rebuilt per request) |
| Comparison: dataset version BERTax distantly related dataset (Mock et al. 2022) Context-only references | Taxonomic classification of DNA sequences beyond sequence similarity using deep neural networks Table 1 (PNAS PDF page 4); SI Table S2 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PNAS 119(35):e2122636119, published 2022-08-26; PMC9436379 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: dna-pathogen-20261012-bertax-eval-deepmicrobes-distantly