Published DNA metagenomic classification comparison; transcribed, not reproduced.
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1 evaluation · 8 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
dna-pathogen-20261009-protocol-portik2022-hifi-zymo-d6331-species
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation None; reference databases as listed in Table 2 Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Single dataset Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version NCBI SRX9569057 Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs HiFi ZymoBIOMICS D6331 gut microbiome standard (PacBio Sequel II HiFi) Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Authors' scoring of species read counts against the community composition Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.population 15 scored species Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id dna-pathogen-20261009-protocol-portik2022-hifi-zymo-d6331-species Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split Single sequencing run Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
attributes.limitations1 values
| Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Table 4, dataset block 'HiFi Zymo D6331 (17 species, staggered)', row 'Centrifuge-h500*' (table row 26) Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: dna-pathogen-20261009-eval-portik2022-hifi-zymo-d6331-centrifuge-1-0-4-h500-abvf