DART-Eval evaluation of DNABERT-2 (fine-tuned) on Regulatory element identification, paired accuracy, scored with Paired accuracy.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DNABERT-2 (fine-tuned) | Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Dataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) | 0.973 paired_accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNABERT-2 (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Aggregation: Not reported DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Paired accuracy Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id dart-eval-task-rei-pair Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description DART-Eval evaluation of DNABERT-2 (fine-tuned) on Regulatory element identification, paired accuracy, scored with Paired accuracy. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark dart-eval-task-rei-pair Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset dart-eval-dataset-encode-ccres-against-dinucleotide-shuffled-backgrounds Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model dart-eval-method-dnabert-2-fine-tuned Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name DNABERT-2 (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: dart-eval-evaluation-dnabert-2-fine-tuned-rei-pair