BEND evaluation of DNABERT-2 on Enhancer annotation, scored with AUPRC.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DNABERT-2 | Task: BEND ENHANCER: Enhancer annotation Dataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) | 0.03 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on BEND ENHANCER: Enhancer annotation A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(DNABERT-2), column(Enhancer annotation) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1.
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation AUPRC Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id bend-task-enhancer Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(DNABERT-2), column(Enhancer annotation) Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description BEND evaluation of DNABERT-2 on Enhancer annotation, scored with AUPRC. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark bend-task-enhancer Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset bend-dataset-fulco-2019-gasperini-2019-and-enformer-enhancer-set Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model bend-method-dnabert-2 Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name DNABERT-2 on BEND ENHANCER: Enhancer annotation Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(DNABERT-2), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: bend-evaluation-dnabert-2-enhancer