BEND evaluation of CNN on Enhancer annotation, scored with AUPRC.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Method: CNN | Task: BEND ENHANCER: Enhancer annotation Dataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) | 0.03 AUPRC fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCNN on BEND ENHANCER: Enhancer annotation A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(CNN), column(Enhancer annotation) |
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A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1.
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: metric implementation AUPRC Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id bend-task-enhancer Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Origin author_reported Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Protocol A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location Table 3, row(CNN), column(Enhancer annotation) Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description BEND evaluation of CNN on Enhancer annotation, scored with AUPRC. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: assessment bend-task-enhancer Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: data bend-dataset-fulco-2019-gasperini-2019-and-enformer-enhancer-set Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: system bend-method-cnn Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name CNN on BEND ENHANCER: Enhancer annotation Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(CNN), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: bend-evaluation-cnn-enhancer