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Evaluation

UTRBERT-6mer on BEACON CMP: Contact map prediction

BEACON harness evaluation of UTRBERT-6mer on Contact map prediction, scored with Top L Precision.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

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Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: UTRBERT-6merTask: BEACON CMP: Contact map prediction
Dataset subset: RNAcontact (BEACON split)
51.56(20.30)% precision_at_l
percent · higher

Uncertainty: type: standard_deviation; value: 20.30

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTRBERT-6mer on BEACON CMP: Contact map prediction

BEACON harness, fixed downstream head per task. Train/validation/test 188/23/80; dataset RNAcontact.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(CMP)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

BEACON harness, fixed downstream head per task. Train/validation/test 188/23/80; dataset RNAcontact.

Configuration
UTRBERT-6mer
Task
BEACON CMP: Contact map prediction
Dataset subset
RNAcontact (BEACON split)
origin
Author-reported evaluation
configuration
Not reported
protocol id
beacon-task-cmp
split
188/23/80
adaptation
Published pre-trained RNA language model, fine-tuned by the BEACON authors
metric implementation
Top L Precision

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
188/23/80
Adaptation
Published pre-trained RNA language model, fine-tuned by the BEACON authors
Scoring implementation
Top L Precision

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

12 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.adaptation
Published pre-trained RNA language model, fine-tuned by the BEACON authors
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.metric_implementation
Top L Precision
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.protocol_id
beacon-task-cmp
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.split
188/23/80
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.origin
author_reported
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.origin

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.protocol
BEACON harness, fixed downstream head per task. Train/validation/test 188/23/80; dataset RNAcontact.
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.protocol

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.source_locator
Table3,p.8,row(UTRBERT-6mer),column(CMP)
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
BEACON harness evaluation of UTRBERT-6mer on Contact map prediction, scored with Top L Precision.
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: description

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Relationship: benchmark
beacon-task-cmp
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:benchmark:beacon-task-cmp

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Relationship: dataset
beacon-dataset-rnacontact
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table3,p.8,row(UTRBERT-6mer),column(CMP)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:dataset:beacon-dataset-rnacontact

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: beacon-evaluation-utrbert-6mer-cmp

areas
rna-transcriptomes
tasks
Contact map prediction
origin
author_reported
protocol
BEACON harness, fixed downstream head per task. Train/validation/test 188/23/80; dataset RNAcontact.
comparison
protocol id: beacon-task-cmp; split: 188/23/80; adaptation: Published pre-trained RNA language model, fine-tuned by the BEACON authors; metric implementation: Top L Precision
missing metadata
checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
source locator
Table3,p.8,row(UTRBERT-6mer),column(CMP)
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