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Evaluation

GRNVBEM · BEELINE 2020 Figure 2 · BF

BEELINE 2020 Figure 2; BF. Source checked, not independently reproduced.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 2 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: GRNVBEMProtocol: BEELINE 2020 Figure 2 · BF
Dataset subset: BF
1.3 AUPRC Ratio
ratio · higher

Uncertainty: status: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNVBEM · BEELINE 2020 Figure 2 · BF

BEELINE 2020 Figure 2

Aggregation: Median across source-described simulation datasets

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 12, column 5
Configuration: GRNVBEMProtocol: BEELINE 2020 Figure 2 · BF
Dataset subset: BF
0.634 Stability Across Datasets
fraction · higher

Uncertainty: status: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNVBEM · BEELINE 2020 Figure 2 · BF

BEELINE 2020 Figure 2

Aggregation: Median across source-described simulation datasets

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 12, column 11

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

BEELINE 2020 Figure 2

Configuration
GRNVBEM
Protocol
BEELINE 2020 Figure 2 · BF
Dataset subset
BF
origin
Author-reported evaluation
configuration
Not reported
protocol id
acquired-protocol-fabd886c5f7a9dbfdbab
dataset version
10.1038/s41592-019-0690-6 source data published 2020
split
BF
population
BF
inputs
None recorded
adaptation
unreported
aggregation
metric-specific; inspect each result

Metadata review: discovered. Unreported conditions prevent automatic comparisons.

Reproduction

Split
BF
Adaptation
unreported
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.adaptation
unreported
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.comparison.aggregation
metric-specific; inspect each result
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.comparison.dataset_version
10.1038/s41592-019-0690-6 source data published 2020
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.comparison.inputs
None recorded
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.comparison.population
BF
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.population

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.comparison.protocol_id
acquired-protocol-fabd886c5f7a9dbfdbab
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.comparison.split
BF
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.conditions.cell_counts
2 values
  • 2000
  • 5000
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.conditions.cell_counts

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.conditions.dropout
none
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.conditions.dropout

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

attributes.conditions.notes
Across-dataset stability is median pairwise top-k edge-set Jaccard index (paper Online Methods), not Spearman correlation. Not an independent experimental run.
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 2 source CSV row 12, column 5

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.conditions.notes

Source artifact SHA-256: 21df5e45c94decf352af1861340e2ac4052c477a9c173b643dcfcd146fffe506

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: discovered

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: acquired-evaluation-6fdc74f4cca8df7a46ea

origin
author_reported
protocol
BEELINE 2020 Figure 2
source locator
Figure 2 source CSV row 12, column 5
conditions
cell counts: 2000; 5000; dropout: none; notes: Across-dataset stability is median pairwise top-k edge-set Jaccard index (paper Online Methods), not Spearman correlation. Not an independent experimental run.; simulated dataset count: 20
comparison
protocol id: acquired-protocol-fabd886c5f7a9dbfdbab; dataset version: 10.1038/s41592-019-0690-6 source data published 2020; split: BF; population: BF; inputs: {}; adaptation: unreported; aggregation: metric-specific; inspect each result
missing metadata
checkpoint revision: unreported; scored count: unreported
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