Evaluation

CAFA3 M100 · CAFA3 MFO all organisms; type1 no-knowledge; mode1 · CAFA3 final benchmark; MFO; all; type1; mode1

CAFA3 MFO all organisms; type1 no-knowledge; mode1; CAFA3 final benchmark; MFO; all; type1; mode1. Source checked, not independently reproduced.

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: CAFA3 M100	Protocol: CAFA3 MFO all organisms; type1 no-knowledge; mode1 · CAFA3 final benchmark; MFO; all; type1; mode1 Dataset subset: CAFA3 final benchmark; MFO; all; type1; mode1	0.2 F1 max fraction · higher Uncertainty: SD 0.014. Separate source Avg(B) and Std(B) columns; not a confidence interval on the printed F1-max. Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source CAFA3 M100 · CAFA3 MFO all organisms; type1 no-knowledge; mode1 · CAFA3 final benchmark; MFO; all; type1; mode1 CAFA3 MFO all organisms; type1 no-knowledge; mode1 Aggregation: source F1-max, not bootstrap mean CAFA: Figshare 8135393 v3, file 17519846 · supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified
Sample annotations are recorded: not yet verified
Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
A pinned run recipe exists: not yet verified
Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Independent validation data exist: not yet verified
Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Evaluation procedure

CAFA3 MFO all organisms; type1 no-knowledge; mode1

Configuration: CAFA3 M100
Protocol: CAFA3 MFO all organisms; type1 no-knowledge; mode1 · CAFA3 final benchmark; MFO; all; type1; mode1
Dataset subset: CAFA3 final benchmark; MFO; all; type1; mode1

origin: Independent external evaluation
configuration: Not reported
protocol id: acquired-protocol-0841c618c0a89fa56f63
dataset version: Figshare 8135393 v3, file 17519846
split: CAFA3 final benchmark; MFO; all; type1; mode1
population: CAFA3 final benchmark; MFO; all; type1; mode1
inputs: unreported
adaptation: unreported
aggregation: metric-specific; inspect each result

Metadata review: discovered. Unreported conditions prevent automatic comparisons.

Reproduction

Split: CAFA3 final benchmark; MFO; all; type1; mode1
Adaptation: unreported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

23 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Comparison: adaptation unreported Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	missing or unspecified No individual claim review recorded independent paper Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Comparison: aggregation metric-specific; inspect each result Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Comparison: dataset version Figshare 8135393 v3, file 17519846 Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Comparison: inputs unreported Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	missing or unspecified No individual claim review recorded independent paper Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Comparison: population CAFA3 final benchmark; MFO; all; type1; mode1 Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.population` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Comparison: protocol id acquired-protocol-0841c618c0a89fa56f63 Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Comparison: split CAFA3 final benchmark; MFO; all; type1; mode1 Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Conditions: benchmark type type1 (no-knowledge, README definition) Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.conditions.benchmark_type` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Conditions: coverage 0.29 Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.conditions.coverage` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact
Conditions: edition CAFA3 Context-only references	CAFA: Figshare 8135393 v3, file 17519846 Original source ↗ supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max Version: Figshare 8135393 v3, file 17519846 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded independent paper Audit details Field: `attributes.conditions.edition` Source artifact SHA-256: `a3de18ef5c0aafecc1a2ca27c7c1d8e82b7332bbb9594e389fbd972cc5100b68` Hash scope: SHA-256 of the named archive member; archive SHA-256 recorded separately Archive member: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

CAFA: Figshare 8135393 v3, file 17519846 · Original source · Figshare 8135393 v3, file 17519846

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: acquired-evaluation-14550072e95d154a6fc6

origin: independent_paper
protocol: CAFA3 MFO all organisms; type1 no-knowledge; mode1
source locator: supplementary_data/cafa3/sheets/mfo_all_type1_mode1_all_fmax_sheet.csv; line 103; ID-model=M100; column F1-max
conditions: edition: CAFA3; ontology: MFO; benchmark type: type1 (no-knowledge, README definition); evaluation mode: mode1, numeric mode-to-protocol mapping not established by README; organisms: all; participant identity: Anonymized official submission code; no method identity inferred; coverage: 0.29; threshold: 0.89
comparison: protocol id: acquired-protocol-0841c618c0a89fa56f63; dataset version: Figshare 8135393 v3, file 17519846; split: CAFA3 final benchmark; MFO; all; type1; mode1; population: CAFA3 final benchmark; MFO; all; type1; mode1; inputs: unreported; adaptation: unreported; aggregation: metric-specific; inspect each result
missing metadata: checkpoint revision: reason: unreported; scored count: reason: unreported

Related records

system: CAFA3 M100
assessment: CAFA3 MFO all organisms; type1 no-knowledge; mode1 · CAFA3 final benchmark; MFO; all; type1; mode1
data: CAFA3 final benchmark; MFO; all; type1; mode1
evaluation: CAFA3 M100 · F1-max · CAFA3 final benchmark; MFO; all; type1; mode1

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