256 mass-matched PubChem candidates per spectrum, neutral mass within 10 ppm; correct identity present. Target formula unavailable to model.
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5 evaluations · 15 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DeepSet [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 1.9 ± 0.5% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.5; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepSet massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@1 row, DeepSet column |
| Configuration: DeepSet [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 21.8 ± 1.4% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.4; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepSet massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@20 row, DeepSet column |
| Configuration: DeepSet [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 8.4 ± 0.6% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.6; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepSet massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@5 row, DeepSet column |
| Configuration: Emb-Cos [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 12.6 ± 0.2% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.2; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmb-Cos massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@1 row, Emb-Cos column |
| Configuration: Emb-Cos [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 51.6 ± 0.9% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.9; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmb-Cos massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@20 row, Emb-Cos column |
| Configuration: Emb-Cos [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 29.9 ± 0.2% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.2; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmb-Cos massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@5 row, Emb-Cos column |
| Configuration: JESTR [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 7.9 ± 1.1% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.1; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceJESTR massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@1 row, JESTR column |
| Configuration: JESTR [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 44.8 ± 1.9% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.9; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceJESTR massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@20 row, JESTR column |
| Configuration: JESTR [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 22.3 ± 1.4% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.4; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceJESTR massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@5 row, JESTR column |
| Configuration: MSAlign [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 19.0 ± 3.2% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 3.2; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSAlign massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@1 row, MSAlign column |
| Configuration: MSAlign [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 64.9 ± 0.9% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.9; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSAlign massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@20 row, MSAlign column |
| Configuration: MSAlign [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 41.2 ± 2.5% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.5; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSAlign massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@5 row, MSAlign column |
| Configuration: MSAlign score fusion (overbar) [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 30.8 ± 2.5% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.5; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSAlign score fusion (overbar) massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@1 row, MSAlign score fusion (overbar) column |
| Configuration: MSAlign score fusion (overbar) [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 82.0 ± 0.8% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.8; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSAlign score fusion (overbar) massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@20 row, MSAlign score fusion (overbar) column |
| Configuration: MSAlign score fusion (overbar) [MSAlign v2] | Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-free Dataset subset: MSAlign v2 massspecgym-mces-formula-free | 59.3 ± 0.7% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 0.7; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSAlign score fusion (overbar) massspecgym-mces-formula-free Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@5 row, MSAlign score fusion (overbar) column |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
4 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.candidate_count 256 Context-only references | MSAlign arXiv v2 Table 3 Table 3; Section 5.1 Version: 2605.19752v2, 25 September 2026 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table 3; Section 5.1 Context-only references | MSAlign arXiv v2 Table 3 Table 3; Section 5.1 Version: 2605.19752v2, 25 September 2026 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description 256 mass-matched PubChem candidates per spectrum, neutral mass within 10 ppm; correct identity present. Target formula unavailable to model. Context-only references | MSAlign arXiv v2 Table 3 Table 3; Section 5.1 Version: 2605.19752v2, 25 September 2026 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name MSAlign v2 massspecgym-mces-formula-free Context-only references | MSAlign arXiv v2 Table 3 Table 3; Section 5.1 Version: 2605.19752v2, 25 September 2026 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
Stable ID: uc20260930-msalign-v2-data-massspecgym-mces-formula-free