The split of ATOM3D LBA that ATOM3D evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
15 evaluations · 15 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Method: 3DCNN | Task: ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Dataset subset: ATOM3D LBA (ATOM3D split) | 1.42 rmse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source3DCNN on ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(LBA RMSE), column(3DCNN) |
| Method: 3DCNN | Task: ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.55 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source3DCNN on ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RP), column(3DCNN) |
| Method: 3DCNN | Task: ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.553 spearman_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source3DCNN on ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RS), column(3DCNN) |
| Method: ENN | Task: ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Dataset subset: ATOM3D LBA (ATOM3D split) | 1.57 rmse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceENN on ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(LBA RMSE), column(ENN) |
| Method: ENN | Task: ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.389 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceENN on ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RP), column(ENN) |
| Method: ENN | Task: ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.408 spearman_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceENN on ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RS), column(ENN) |
| Method: GNN | Task: ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Dataset subset: ATOM3D LBA (ATOM3D split) | 1.6 rmse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGNN on ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(LBA RMSE), column(GNN) |
| Method: GNN | Task: ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.545 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGNN on ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RP), column(GNN) |
| Method: GNN | Task: ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.533 spearman_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGNN on ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RS), column(GNN) |
| Configuration: DeepAffinity (unified RNN/RNN-CNN; DSSP-derived SPS) (cited as [Karimi et al., 2019]) | Task: ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Dataset subset: ATOM3D LBA (ATOM3D split) | 1.89 rmse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTrained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(LBA RMSE), column([Karimi et al., 2019]) |
| Configuration: DeepAffinity (unified RNN/RNN-CNN; DSSP-derived SPS) (cited as [Karimi et al., 2019]) | Task: ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.415 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTrained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RP), column([Karimi et al., 2019]) |
| Configuration: DeepAffinity (unified RNN/RNN-CNN; DSSP-derived SPS) (cited as [Karimi et al., 2019]) | Task: ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.426 spearman_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTrained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RS), column([Karimi et al., 2019]) |
| Configuration: DeepDTA (ATOM3D baseline) (cited as [Öztürk et al., 2018]) | Task: ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Dataset subset: ATOM3D LBA (ATOM3D split) | 1.56 rmse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepDTA (ATOM3D baseline) on ATOM3D LBA-RMSE: Ligand binding affinity, root mean squared error Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(LBA RMSE), column([Öztürk et al., 2018]) |
| Configuration: DeepDTA (ATOM3D baseline) (cited as [Öztürk et al., 2018]) | Task: ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.573 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepDTA (ATOM3D baseline) on ATOM3D LBA-RP: Ligand binding affinity, global Pearson correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RP), column([Öztürk et al., 2018]) |
| Configuration: DeepDTA (ATOM3D baseline) (cited as [Öztürk et al., 2018]) | Task: ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Dataset subset: ATOM3D LBA (ATOM3D split) | 0.574 spearman_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepDTA (ATOM3D baseline) on ATOM3D LBA-RS: Ligand binding affinity, global Spearman correlation Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed. Aggregation: Not reported ATOM3D: Tasks On Molecules in Three Dimensions · Table 5, row(glob. RS), column([Öztürk et al., 2018]) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of ATOM3D LBA that ATOM3D evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name ATOM3D LBA (ATOM3D split) Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: atom3d-dataset-atom3d-lba