rewire.itbenchmarks
Dataset

23 independent prokaryotic promoter test sets

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

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  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

2 evaluations · 2 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: iPro-MPTask: Multi-species prokaryotic promoter detection
Dataset: 23 independent prokaryotic promoter test sets
0.935 Mean AUC
unitless · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

iPro-MP: Multi-species prokaryotic promoter detection

Average over independent testing sets.

Aggregation: Not reported

iPro-MP: a BERT-based model to predict multiple prokaryotic promoters · Table 2, iPro-MP row, AUC column
Configuration: PromptTask: Multi-species prokaryotic promoter detection
Dataset: 23 independent prokaryotic promoter test sets
0.835 Mean AUC
unitless · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Prompt: Multi-species prokaryotic promoter detection

Average over the same independent testing sets.

Aggregation: Not reported

iPro-MP: a BERT-based model to predict multiple prokaryotic promoters · Table 2, Prompt row, AUC column

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

4 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.split
independent test
Context-only references
iPro-MP: a BERT-based model to predict multiple prokaryotic promoters

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:55.361Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: d21541ee1f7a168da8e4a7c0f0e133c970cbe7bc41118f43a929f08b2fd2afd1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.version
23 test sets
Context-only references
iPro-MP: a BERT-based model to predict multiple prokaryotic promoters

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:55.361Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: d21541ee1f7a168da8e4a7c0f0e133c970cbe7bc41118f43a929f08b2fd2afd1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
No value recorded
Context-only references
iPro-MP: a BERT-based model to predict multiple prokaryotic promoters

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:55.361Z

missing or unspecified

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: d21541ee1f7a168da8e4a7c0f0e133c970cbe7bc41118f43a929f08b2fd2afd1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
23 independent prokaryotic promoter test sets
Context-only references
iPro-MP: a BERT-based model to predict multiple prokaryotic promoters

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:55.361Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: d21541ee1f7a168da8e4a7c0f0e133c970cbe7bc41118f43a929f08b2fd2afd1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: needs review

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: reported-dataset-e0f34dcaa1ba3b

areas
microbes-communities
version
23 test sets
split
independent test
missing metadata
accession: not_reported_in_legacy_extract
entity classification
review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: ipromp-2025; source locator: Methods: Data collection and preprocessing; Performance evaluation; cached text lines 54–56, 69–72; ambiguities: None recorded
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