Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
3 evaluations · 18 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: ESM2_DPM | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.573 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column MCC; XML row4 column6 |
| Configuration: ESM2_AMPS | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.793 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column AUC; XML row2 column5 |
| Configuration: ESM2_AMPS | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.712 Precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column Precision; XML row2 column7 |
| Configuration: ESM2_AMP_CSE | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.563 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column MCC; XML row3 column6 |
| Configuration: ESM2_AMPS | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.804 F1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column F1 Score; XML row2 column4 |
| Configuration: ESM2_AMP_CSE | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.798 F1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column F1 Score; XML row3 column4 |
| Configuration: ESM2_DPM | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.77 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column Accuracy; XML row4 column2 |
| Configuration: ESM2_DPM | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.777 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column AUC; XML row4 column5 |
| Configuration: ESM2_DPM | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.702 Precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column Precision; XML row4 column7 |
| Configuration: ESM2_AMPS | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.776 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column Accuracy; XML row2 column2 |
| Configuration: ESM2_AMP_CSE | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.806 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column AUC; XML row3 column5 |
| Configuration: ESM2_AMP_CSE | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.766 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Accuracy; XML row3 column2 |
| Configuration: ESM2_DPM | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.936 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column Recall; XML row4 column3 |
| Configuration: ESM2_AMPS | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.579 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column MCC; XML row2 column6 |
| Configuration: ESM2_AMPS | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.924 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column Recall; XML row2 column3 |
| Configuration: ESM2_AMP_CSE | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.926 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Recall; XML row3 column3 |
| Configuration: ESM2_AMP_CSE | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.701 Precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Precision; XML row3 column7 |
| Configuration: ESM2_DPM | Protocol: real_test PPI held-out evaluation (protein-protein interaction prediction) Dataset: real_test PPI held-out evaluation | 0.802 F1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column F1 Score; XML row4 column4 |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Table 3: Accuracy, real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Split Paper real_test dataset; Table 3. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Subset real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: needs review
Stable ID: paper-dataset-a825ad55756b359150