rewirebio.iobenchmarks
Dataset

MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)

MassSpecGym test fold; de novo generation with the ground-truth formula supplied.

Evaluation results

60 evaluations · 60 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: DiffMS (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
2.3% Top-1 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

DiffMS on MassSpecGym denovo-bonus (Top-1 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-1 Accuracy'
Configuration: DiffMS (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
14 Top-1 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

DiffMS on MassSpecGym denovo-bonus (Top-1 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-1 MCES'
Configuration: DiffMS (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.28 Top-1 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

DiffMS on MassSpecGym denovo-bonus (Top-1 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-1 Tanimoto'
Configuration: DiffMS (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
4.25% Top-10 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

DiffMS on MassSpecGym denovo-bonus (Top-10 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-10 Accuracy'
Configuration: DiffMS (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
11.7 Top-10 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

DiffMS on MassSpecGym denovo-bonus (Top-10 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-10 MCES'
Configuration: DiffMS (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.39 Top-10 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

DiffMS on MassSpecGym denovo-bonus (Top-10 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-10 Tanimoto'
Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
1.5% Top-1 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-1 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-1 Accuracy'
Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
12.2 Top-1 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-1 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-1 MCES'
Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.35 Top-1 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-1 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-1 Tanimoto'
Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
10.3% Top-10 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-10 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-10 Accuracy'
Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
6.06 Top-10 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-10 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-10 MCES'
Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.53 Top-10 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-10 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-10 Tanimoto'
Configuration: FRIGID (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
18.3% Top-1 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FRIGID on MassSpecGym denovo-bonus (Top-1 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-1 Accuracy'
Configuration: FRIGID (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
13.5 Top-1 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FRIGID on MassSpecGym denovo-bonus (Top-1 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-1 MCES'
Configuration: FRIGID (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.43 Top-1 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FRIGID on MassSpecGym denovo-bonus (Top-1 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-1 Tanimoto'
Configuration: FRIGID (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
22% Top-10 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FRIGID on MassSpecGym denovo-bonus (Top-10 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-10 Accuracy'
Configuration: FRIGID (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
11.7 Top-10 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FRIGID on MassSpecGym denovo-bonus (Top-10 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-10 MCES'
Configuration: FRIGID (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.47 Top-10 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

FRIGID on MassSpecGym denovo-bonus (Top-10 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-10 Tanimoto'
Configuration: MADGEN (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
1.31% Top-1 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

MADGEN on MassSpecGym denovo-bonus (Top-1 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-1 Accuracy'
Configuration: MADGEN (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
27.5 Top-1 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

MADGEN on MassSpecGym denovo-bonus (Top-1 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-1 MCES'
Configuration: MADGEN (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.2 Top-1 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

MADGEN on MassSpecGym denovo-bonus (Top-1 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-1 Tanimoto'
Configuration: MADGEN (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
1.54% Top-10 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

MADGEN on MassSpecGym denovo-bonus (Top-10 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-10 Accuracy'
Configuration: MADGEN (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
16.8 Top-10 MCES (de novo)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

MADGEN on MassSpecGym denovo-bonus (Top-10 MCES)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-10 MCES'
Configuration: MADGEN (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
0.26 Top-10 tanimoto (de novo)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

MADGEN on MassSpecGym denovo-bonus (Top-10 Tanimoto)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-10 Tanimoto'
Configuration: MIST + MolForge, reimplemented by the authors, batched inference bug (batch size 24) (MassSpecGym in the Wild)Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9)
Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
31.8% Top-1 accuracy (de novo, exact match)
percent · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

MIST + MolForge, reimplemented by the authors, batched inference bug (batch size 24) on MassSpecGym denovo-bonus (Top-1 Accuracy)

lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy

Aggregation: Not reported

MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MIST + MolForge† (inflated, batch size=24)', column 'Top-1 Accuracy'

Source checking is not independent reproduction. Release 2026-10-23-5347695500ed.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-23-5347695500ed · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

5 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statementOriginal source and locationReview and provenance
Source location
Table 9 caption
Context-only references
MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery

Original source ↗

Table 9 caption

Version: arXiv:2606.19624v1 (submitted 2026-06-17), arXiv HTML rendering
Retrieved: 2026-10-11T21:27:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 47f329399853bdd2a513707b97271dfd8875271be383168effde1b0f13efb0d2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Split
Test fold
Context-only references
MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery

Original source ↗

Table 9 caption

Version: arXiv:2606.19624v1 (submitted 2026-06-17), arXiv HTML rendering
Retrieved: 2026-10-11T21:27:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 47f329399853bdd2a513707b97271dfd8875271be383168effde1b0f13efb0d2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Version
MassSpecGym as used in each cited work; corrected rows use uniform RDKit canonicalization (MassSpecGym v1.5)
Context-only references
MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery

Original source ↗

Table 9 caption

Version: arXiv:2606.19624v1 (submitted 2026-06-17), arXiv HTML rendering
Retrieved: 2026-10-11T21:27:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 47f329399853bdd2a513707b97271dfd8875271be383168effde1b0f13efb0d2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
MassSpecGym test fold; de novo generation with the ground-truth formula supplied.
Context-only references
MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery

Original source ↗

Table 9 caption

Version: arXiv:2606.19624v1 (submitted 2026-06-17), arXiv HTML rendering
Retrieved: 2026-10-11T21:27:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 47f329399853bdd2a513707b97271dfd8875271be383168effde1b0f13efb0d2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Name
MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild)
Context-only references
MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery

Original source ↗

Table 9 caption

Version: arXiv:2606.19624v1 (submitted 2026-06-17), arXiv HTML rendering
Retrieved: 2026-10-11T21:27:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 47f329399853bdd2a513707b97271dfd8875271be383168effde1b0f13efb0d2

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

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Stable ID: lit-otheromics-20261011-msgwild-data-denovo-bonus

areas
metabolomics
contexts
research
version
MassSpecGym as used in each cited work; corrected rows use uniform RDKit canonicalization (MassSpecGym v1.5)
split
Test fold
source locator
Table 9 caption
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