| Configuration: DiffMS (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 2.3% Top-1 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDiffMS on MassSpecGym denovo-bonus (Top-1 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-1 Accuracy' |
|---|
| Configuration: DiffMS (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 14 Top-1 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDiffMS on MassSpecGym denovo-bonus (Top-1 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-1 MCES' |
|---|
| Configuration: DiffMS (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.28 Top-1 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDiffMS on MassSpecGym denovo-bonus (Top-1 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-1 Tanimoto' |
|---|
| Configuration: DiffMS (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 4.25% Top-10 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDiffMS on MassSpecGym denovo-bonus (Top-10 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-10 Accuracy' |
|---|
| Configuration: DiffMS (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 11.7 Top-10 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDiffMS on MassSpecGym denovo-bonus (Top-10 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-10 MCES' |
|---|
| Configuration: DiffMS (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.39 Top-10 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDiffMS on MassSpecGym denovo-bonus (Top-10 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'DiffMS', column 'Top-10 Tanimoto' |
|---|
| Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 1.5% Top-1 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-1 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-1 Accuracy' |
|---|
| Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 12.2 Top-1 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-1 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-1 MCES' |
|---|
| Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.35 Top-1 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-1 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-1 Tanimoto' |
|---|
| Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 10.3% Top-10 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-10 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-10 Accuracy' |
|---|
| Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 6.06 Top-10 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-10 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-10 MCES' |
|---|
| Configuration: FOAM (DiffMS + PubChem) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.53 Top-10 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFOAM (DiffMS + PubChem) on MassSpecGym denovo-bonus (Top-10 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FOAM (DiffMS + PubChem)', column 'Top-10 Tanimoto' |
|---|
| Configuration: FRIGID (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 18.3% Top-1 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFRIGID on MassSpecGym denovo-bonus (Top-1 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-1 Accuracy' |
|---|
| Configuration: FRIGID (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 13.5 Top-1 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFRIGID on MassSpecGym denovo-bonus (Top-1 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-1 MCES' |
|---|
| Configuration: FRIGID (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.43 Top-1 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFRIGID on MassSpecGym denovo-bonus (Top-1 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-1 Tanimoto' |
|---|
| Configuration: FRIGID (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 22% Top-10 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFRIGID on MassSpecGym denovo-bonus (Top-10 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-10 Accuracy' |
|---|
| Configuration: FRIGID (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 11.7 Top-10 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFRIGID on MassSpecGym denovo-bonus (Top-10 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-10 MCES' |
|---|
| Configuration: FRIGID (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.47 Top-10 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceFRIGID on MassSpecGym denovo-bonus (Top-10 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'FRIGID', column 'Top-10 Tanimoto' |
|---|
| Configuration: MADGEN (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 1.31% Top-1 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceMADGEN on MassSpecGym denovo-bonus (Top-1 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-1 Accuracy' |
|---|
| Configuration: MADGEN (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 27.5 Top-1 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceMADGEN on MassSpecGym denovo-bonus (Top-1 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-1 MCES' |
|---|
| Configuration: MADGEN (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.2 Top-1 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceMADGEN on MassSpecGym denovo-bonus (Top-1 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-1 Tanimoto' |
|---|
| Configuration: MADGEN (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 1.54% Top-10 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceMADGEN on MassSpecGym denovo-bonus (Top-10 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-10 Accuracy' |
|---|
| Configuration: MADGEN (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 MCES (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 16.8 Top-10 MCES (de novo) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceMADGEN on MassSpecGym denovo-bonus (Top-10 MCES) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-mces Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-10 MCES' |
|---|
| Configuration: MADGEN (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-10 Tanimoto (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 0.26 Top-10 tanimoto (de novo) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceMADGEN on MassSpecGym denovo-bonus (Top-10 Tanimoto) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-10-tanimoto Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MADGEN', column 'Top-10 Tanimoto' |
|---|
| Configuration: MIST + MolForge, reimplemented by the authors, batched inference bug (batch size 24) (MassSpecGym in the Wild) | Protocol: MassSpecGym de novo generation with formula (bonus), Top-1 Accuracy (MassSpecGym in the Wild Table 9) Dataset: MassSpecGym test fold, de novo generation with formula (bonus) (MassSpecGym in the Wild) | 31.8% Top-1 accuracy (de novo, exact match) percent · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMIST + MolForge, reimplemented by the authors, batched inference bug (batch size 24) on MassSpecGym denovo-bonus (Top-1 Accuracy) lit-otheromics-20261011-msgwild-protocol-denovo-bonus-top-1-accuracy Aggregation: Not reported MassSpecGym in the Wild: Uncovering and Correcting Evaluation Pitfalls in AI-Driven Molecule Discovery · Table 9, row 'MIST + MolForge† (inflated, batch size=24)', column 'Top-1 Accuracy' |
|---|