Held-out test data for the DNALONGBENCH Contact map prediction task.
5 evaluations · 30 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.133 Stratum adjusted correlation coefficient (average over CMP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-Ph', column 'Avg' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.101 Stratum adjusted correlation coefficient (GM12878) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-Ph', column 'GM12878' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.13 Stratum adjusted correlation coefficient (H1hESC) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-Ph', column 'H1hESC' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.145 Stratum adjusted correlation coefficient (HCT116) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-Ph', column 'HCT116' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.153 Stratum adjusted correlation coefficient (HFF) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-Ph', column 'HFF' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.138 Stratum adjusted correlation coefficient (IMR90) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-Ph', column 'IMR90' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.127 Stratum adjusted correlation coefficient (average over CMP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-PS', column 'Avg' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.097 Stratum adjusted correlation coefficient (GM12878) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-PS', column 'GM12878' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.123 Stratum adjusted correlation coefficient (H1hESC) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-PS', column 'H1hESC' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.139 Stratum adjusted correlation coefficient (HCT116) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-PS', column 'HCT116' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.142 Stratum adjusted correlation coefficient (HFF) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-PS', column 'HFF' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.132 Stratum adjusted correlation coefficient (IMR90) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Caduceus-PS', column 'IMR90' |
| Configuration: CNN (DNALONGBENCH, CMP) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.015 Stratum adjusted correlation coefficient (average over CMP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'CNN', column 'Avg' |
| Configuration: CNN (DNALONGBENCH, CMP) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.01 Stratum adjusted correlation coefficient (GM12878) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'CNN', column 'GM12878' |
| Configuration: CNN (DNALONGBENCH, CMP) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.024 Stratum adjusted correlation coefficient (H1hESC) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'CNN', column 'H1hESC' |
| Configuration: CNN (DNALONGBENCH, CMP) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.001 Stratum adjusted correlation coefficient (HCT116) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'CNN', column 'HCT116' |
| Configuration: CNN (DNALONGBENCH, CMP) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.025 Stratum adjusted correlation coefficient (HFF) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'CNN', column 'HFF' |
| Configuration: CNN (DNALONGBENCH, CMP) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.013 Stratum adjusted correlation coefficient (IMR90) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'CNN', column 'IMR90' |
| Configuration: Akita (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.23 Stratum adjusted correlation coefficient (average over CMP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Expert Model', column 'Avg' |
| Configuration: Akita (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.227 Stratum adjusted correlation coefficient (GM12878) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Expert Model', column 'GM12878' |
| Configuration: Akita (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.247 Stratum adjusted correlation coefficient (H1hESC) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Expert Model', column 'H1hESC' |
| Configuration: Akita (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.21 Stratum adjusted correlation coefficient (HCT116) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Expert Model', column 'HCT116' |
| Configuration: Akita (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.258 Stratum adjusted correlation coefficient (HFF) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Expert Model', column 'HFF' |
| Configuration: Akita (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.21 Stratum adjusted correlation coefficient (IMR90) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH CMP lit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'Expert Model', column 'IMR90' |
| Configuration: HyenaDNA (DNALONGBENCH) | Protocol: DNALONGBENCH Contact map prediction (Table 4) Dataset: DNALONGBENCH Contact map prediction test set | 0.115 Stratum adjusted correlation coefficient (average over CMP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-cmp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 4, row 'HyenaDNA', column 'Avg' |
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Methods 'Benchmark dataset' for Contact map prediction; Table 2 Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Contact map prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split Held-out test set as defined by DNALONGBENCH Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Contact map prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Held-out test data for the DNALONGBENCH Contact map prediction task. Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Contact map prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name DNALONGBENCH Contact map prediction test set Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Contact map prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: lit-genomics-20261011-dnalongbench-data-cmp