In silico tumour-in-plasma read mixtures with known tumour fraction (Giuili et al. 2025).
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10 evaluations · 50 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.01 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, H3; row 'CelFiE'; column '183M' under 'WGBS-TT' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.0070* limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, I3; row 'CelFiE'; column '310M' under 'WGBS-TT' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.007 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, J3; row 'CelFiE'; column '620M' under 'WGBS-TT' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.025 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, G3; row 'CelFiE'; column '62M' under 'WGBS-TT' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.007 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, B4; row 'CelFiE'; column 'WGBS-TT' |
| Configuration: CIBERSORT (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.175 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCIBERSORT tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, H12; row 'CIBERSORT'; column '183M' under 'WGBS-TT' |
| Configuration: CIBERSORT (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.25 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCIBERSORT tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, I12; row 'CIBERSORT'; column '310M' under 'WGBS-TT' |
| Configuration: CIBERSORT (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCIBERSORT tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, J12; row 'CIBERSORT'; column '620M' under 'WGBS-TT' |
| Configuration: CIBERSORT (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.5 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCIBERSORT tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, G12; row 'CIBERSORT'; column '62M' under 'WGBS-TT' |
| Configuration: CIBERSORT (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.25 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCIBERSORT tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, B3; row 'CIBERSORT'; column 'WGBS-TT' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.175 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, H11; row 'EpiDISH_RPC'; column '183M' under 'WGBS-TT' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.25 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, I11; row 'EpiDISH_RPC'; column '310M' under 'WGBS-TT' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.075 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, J11; row 'EpiDISH_RPC'; column '620M' under 'WGBS-TT' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.375 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, G11; row 'EpiDISH_RPC'; column '62M' under 'WGBS-TT' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.25 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, B7; row 'EpiDISH_RPC'; column 'WGBS-TT' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.175 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, H10; row 'EpiSCORE'; column '183M' under 'WGBS-TT' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, I10; row 'EpiSCORE'; column '310M' under 'WGBS-TT' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.05 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, J10; row 'EpiSCORE'; column '620M' under 'WGBS-TT' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.25 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, G10; row 'EpiSCORE'; column '62M' under 'WGBS-TT' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, B8; row 'EpiSCORE'; column 'WGBS-TT' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.01 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, H6; row 'EpiDISH_CP_eq'; column '183M' under 'WGBS-TT' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.0070* limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, I6; row 'EpiDISH_CP_eq'; column '310M' under 'WGBS-TT' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.007 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, J6; row 'EpiDISH_CP_eq'; column '620M' under 'WGBS-TT' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.0375 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, G6; row 'EpiDISH_CP_eq'; column '62M' under 'WGBS-TT' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow WGBS-TT tumour-fraction limit of detection Dataset: DecoNFlow benchmark WGBS-TT in silico mixtures | 0.01 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (WGBS-TT) ctdnameth-20261009-protocol-giuili2025-wgbs-tt-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, B5; row 'EpiDISH_CP_eq'; column 'WGBS-TT' |
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Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
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8 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.population 1,640 WGBS in silico mixtures: tumour tissue reads (TCGA BLCA, BRCA, LUAD, LUSC) mixed into healthy plasma cfDNA reads Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.scope_note Proxy for patient plasma: tumour reads come from tissue or a cell line, not from patient cfDNA. Counts in the preprint do not reconcile: the abstract and Methods state 3,690 mixtures; the Results dataset counts (1,640, 1,550 and 440) sum to 3,630; the Methods arithmetic gives 1,600, 1,500 and 500 tumour mixtures plus 40, 50 and 50 healthy replicates (3,740). Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.source_locator Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.split Four depths (62M, 183M, 310M, 620M aligned reads), ten tumour fractions from 0.01% to 50% plus 0%, ten replicates each Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.total 1640 Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.version bioRxiv version 1 (2025-11-27); mixtures generated with SillyMix v1.1.0 Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| description In silico tumour-in-plasma read mixtures with known tumour fraction (Giuili et al. 2025). Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| name DecoNFlow benchmark WGBS-TT in silico mixtures Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
Release 2026-10-10-7b8f80935f90 · Record review: source checked
Stable ID: ctdnameth-20261009-data-giuili2025-wgbs-tt-in-silico-mixtures