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Dataset

Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture dataset

Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture dataset; bounded primary-source candidate.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-10-07-1448159e6a81 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture configurationProtocol: Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture protocol
Dataset: Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture dataset
93.7% positive_percent_agreement_initial_blood_culture
percent · higher

Uncertainty: 95% CI 84.5–98.2%

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture evaluation

amp-20261007-dna-pathogens-protocol

Aggregation: Not reported

Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture source · Blauwkamp et al. primary article Table 2, PDF page 7, Positive by initial blood culture row: NGS positive 59, NGS negative 4, Agreement 93.7%, 95% CI 84.5–98.2%. Results clinical-validation subsection calls this sensitivity.

Source checking is not independent reproduction. Release 2026-10-07-1448159e6a81.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

5 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-07-1448159e6a81
Property and statementOriginal source and locationReview and provenance
attributes.population
SEP-SEQ: 350 prospectively enrolled patients presenting to emergency department with sepsis alert; 348 had both sequencing and initial blood-culture results; initial blood-culture-positive subset n=63.
Context-only references
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture source

Original source ↗

No field-specific location recorded

Version: Blauwkamp et al., Nature Microbiology 4, 663–674 (2019)
Retrieved: 2026-10-07T12:27:21.172039+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: 3256a8fc4624958df4b1c7bb84632c7021240cf9471e558b625c149827a024ba

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.split
Prospective SEP-SEQ clinical cohort, not a model training/test split
Context-only references
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture source

Original source ↗

No field-specific location recorded

Version: Blauwkamp et al., Nature Microbiology 4, 663–674 (2019)
Retrieved: 2026-10-07T12:27:21.172039+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 3256a8fc4624958df4b1c7bb84632c7021240cf9471e558b625c149827a024ba

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.version
Not reported
Context-only references
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture source

Original source ↗

No field-specific location recorded

Version: Blauwkamp et al., Nature Microbiology 4, 663–674 (2019)
Retrieved: 2026-10-07T12:27:21.172039+00:00

missing or unspecified

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 3256a8fc4624958df4b1c7bb84632c7021240cf9471e558b625c149827a024ba

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture dataset; bounded primary-source candidate.
Context-only references
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture source

Original source ↗

No field-specific location recorded

Version: Blauwkamp et al., Nature Microbiology 4, 663–674 (2019)
Retrieved: 2026-10-07T12:27:21.172039+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 3256a8fc4624958df4b1c7bb84632c7021240cf9471e558b625c149827a024ba

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture dataset
Context-only references
Karius 2019 plasma microbial cfDNA positive agreement with initial blood culture source

Original source ↗

No field-specific location recorded

Version: Blauwkamp et al., Nature Microbiology 4, 663–674 (2019)
Retrieved: 2026-10-07T12:27:21.172039+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 3256a8fc4624958df4b1c7bb84632c7021240cf9471e558b625c149827a024ba

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-10-07-1448159e6a81 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: amp-20261007-dna-pathogens-dataset

areas
dna-genomes
method types
conventional_pipeline
tasks
pathogen_detection
missing metadata
version: No immutable dataset version extracted
population
SEP-SEQ: 350 prospectively enrolled patients presenting to emergency department with sepsis alert; 348 had both sequencing and initial blood-culture results; initial blood-culture-positive subset n=63.
split
Prospective SEP-SEQ clinical cohort, not a model training/test split
version
Not reported
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