Configuration

RhoMax + retinal

Graph attention on predicted pocket structures with retinal.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

5 evaluations · 20 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.057 ± 0.05 MAE electronvolt · lower Uncertainty: SD 0.05 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	13.46 ± 11.7 MAE nanometre · lower Uncertainty: SD 11.7 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.045 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	10.9 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.046 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	10.29 ± 12.2 MAE nanometre · lower Uncertainty: SD 12.2 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.027 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	6.14 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.045 ± 0.04 MAE electronvolt · lower Uncertainty: SD 0.04 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	10.24 ± 9.3 MAE nanometre · lower Uncertainty: SD 9.3 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.036 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	7.95 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	0.045 ± 0.05 MAE electronvolt · lower Uncertainty: SD 0.05 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 3, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	9.99 ± 11.6 MAE nanometre · lower Uncertainty: SD 11.6 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 3, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	0.026 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 3, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	5.85 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 3, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	0.090 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 4, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	23.33 ± 13.7 MAE nanometre · lower Uncertainty: SD 13.7 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 4, column mean and standard deviation rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	0.09 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 4, column median rhomax-retinal
Configuration: RhoMax + retinal	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	23.7 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source RhoMax + retinal / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 4, column median rhomax-retinal

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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Evidence

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Evidence table

Inspect claims, sources and review details

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2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Facets: method types 1 values supervised_machine_learning Individual claims	RhoMax 2024 primary article Original source ↗ RhoMax Methods: a graph neural network trained on structures Version: 2024 journal article; XML pinned by SHA-256 Retrieved: 2026-09-30	conflicting claim ["source-hash-verification","automated-source-review"] · 2026-10-12 Audit details Correct the method type from none to supervised_machine_learning (use-case baseline review 2026-10-12, table 1). Evidence from docs/reviews/use-cases/baselines-2026-10-12.md. Independent review 2026-10-12: approved. See docs/reviews/2026-10-12-method-type-corrections.md. Conflicting source claim: `"[\"supervised_machine_learning\"]"`. Claim record status: source_checked. Field: `facets.method_types` Claim: metadata-correction-tags-20261012-a9c09627cbc8f39a0ed9 Source artifact SHA-256: `93814dd95c40cb109d592c2917728dc568c0445571e08180b188e726a4bd8f19` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `93814dd95c40cb109d592c2917728dc568c0445571e08180b188e726a4bd8f19` Extraction artifact
Relationship: configuration of uc20260930-model-rhomax Individual claims	RhoMax 2024 primary article Original source ↗ Table 1; Comparison to Previous Methods; Network Architecture Version: 2024 journal article; XML pinned by SHA-256 Retrieved: 2026-09-30	source checked ["automated-source-review"] · 2026-09-30T21:40:59.576893+00:00 Audit details Field: `links:configuration_of:uc20260930-model-rhomax` Claim: uc20260930-config-family-eb1f4570d412714b Source artifact SHA-256: `93814dd95c40cb109d592c2917728dc568c0445571e08180b188e726a4bd8f19` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

RhoMax 2024 primary article · Original source · 2024 journal article; XML pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: uc20260930-rhomax-config-rhomax-retinal

areas: proteins-complexes
method types: supervised_machine_learning
source locator: See linked evaluation and result locators
missing metadata: checkpoint hash: reason: unextracted
review: method: automated-source-review; reviewer: codex; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.; reviewer note: role: experimental use-case curation

Related records

configuration of: RhoMax
subject: RhoMax + retinal: facets.method_types
subject: RhoMax + retinal family identity
system: RhoMax + retinal / mean
system: RhoMax + retinal / split 1
system: RhoMax + retinal / split 2
system: RhoMax + retinal / split 3
system: RhoMax + retinal / split 4

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