AlphaGenome raw splice site score, maximum aggregation (Jaganathan et al. 2026)
AlphaGenome raw splice site score, maximum aggregation: 1 Mb context; raw SPLICE_SITES score with maximum aggregation; one of the 40 scoring configurations tested, reported in the Methods only for GTEx and GEL GT/AG auPRC.
Overview
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Evaluations and results
2 evaluations · 2 results. Different protocols are not a single leaderboard.
Sorted by AUPRC (all variants; essential splice variants excluded) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
All 2 result rows with coverage, uncertainty and sources
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Strengths, limitations and unresolved questions
Evidence
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- A unified framework for quantitative splicing and transcript prediction (Jaganathan et al., bioRxiv 2026) · Original source · bioRxiv preprint version 1, posted 2026-10-11; full-text PDF (57 pages)
Technical metadata and extraction receipts
Stable ID: rna-splicing-20261013-spliceai2-config-alphagenome-splice-site-max
- areas
- dna-genomes
- contexts
- research
- method types
- supervised_machine_learning
- foundation model eligible
- false
- reported name
- AlphaGenome (raw splice site score)
- parameters
- 1 Mb context; raw SPLICE_SITES score with maximum aggregation; one of the 40 scoring configurations tested, reported in the Methods only for GTEx and GEL GT/AG auPRC
- access reuse
- Run at the University of Oxford by co-authors
- source locator
- Methods 'Evaluation of competing methods', AlphaGenome paragraph
- missing metadata
- version: reason: unreported; note: API or weights version not printed.
- provenance note
- AlphaGenome raw splice site score, maximum aggregation (Jaganathan et al. 2026), as evaluated in the SpliceAI2 paper.