Configuration

Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)

Frozen features with a fixed alpha-10 ridge head fitted only on training rows; all 184 Rhomax by_wild_type held-out proteins scored. This selected split is not a whole FLIP2 score.

1 evaluation · 2 results

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 2 results. Different protocols are not a single leaderboard.

Protocol: FLIP2 Rhomax by_wild_type · Dataset subset: FLIP2 Rhomax by_wild_type test subset

Sorted by NDCG (cutoff not stated) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	NDCG (cutoff not stated)	Spearman
Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)Evaluation	0.955	0.418

All 2 result rows with coverage, uncertainty and sources

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)	Protocol: FLIP2 Rhomax by_wild_type Dataset subset: FLIP2 Rhomax by_wild_type test subset	0.955 NDCG (cutoff not stated) unitless · higher Uncertainty: Not reported by the source: Not estimated; one selected evaluation. Coverage: 184/184 scored	Rewire evaluation · Source checked Methods, coverage and source Protein composition + fixed ridge probe on FLIP2 Rhomax by_wild_type FLIP2 Rhomax by_wild_type Aggregation: Not reported Protein composition + fixed ridge probe: report; Protein composition + fixed ridge probe: audit · metrics.ndcg
Configuration: Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)	Protocol: FLIP2 Rhomax by_wild_type Dataset subset: FLIP2 Rhomax by_wild_type test subset	0.418 Spearman unitless · higher Uncertainty: Not reported by the source: Not estimated; one selected evaluation. Coverage: 184/184 scored	Rewire evaluation · Source checked Methods, coverage and source Protein composition + fixed ridge probe on FLIP2 Rhomax by_wild_type FLIP2 Rhomax by_wild_type Aggregation: Not reported Protein composition + fixed ridge probe: report; Protein composition + fixed ridge probe: audit · metrics.spearman

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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How it works, versions and access

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Evidence

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Evidence table

Inspect claims, sources and review details

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Facets: method types 1 values conventional_pipeline Individual claims	Protein composition + fixed ridge probe: audit Original source ↗ Fixed training-mean and composition-ridge probes (record descriptions) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1663d1f04b2bbd6dfcff77fea78129d30b0de191 Retrieved: 2026-09-22T21:18:22Z	conflicting claim ["automated-source-review"] · 2026-10-12 Audit details Correct the method type from none to conventional_pipeline (use-case baseline review 2026-10-12, table 2). Evidence from docs/reviews/use-cases/baselines-2026-10-12.md. Independent review 2026-10-12: approved. See docs/reviews/2026-10-12-method-type-corrections.md. Conflicting source claim: `"[\"conventional_pipeline\"]"`. Claim record status: source_checked. Field: `facets.method_types` Claim: metadata-correction-tags-20261012-93b102404ea71843e536 Source artifact SHA-256: `4126d97686aaa026bab6989f85c405e097b383831e4b8012232394c2ec9178de` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Facets: method types 1 values conventional_pipeline Individual claims	Protein composition + fixed ridge probe: report Original source ↗ Fixed training-mean and composition-ridge probes (record descriptions) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1663d1f04b2bbd6dfcff77fea78129d30b0de191 Retrieved: 2026-09-22T21:18:22Z	conflicting claim ["automated-source-review"] · 2026-10-12 Audit details Correct the method type from none to conventional_pipeline (use-case baseline review 2026-10-12, table 2). Evidence from docs/reviews/use-cases/baselines-2026-10-12.md. Independent review 2026-10-12: approved. See docs/reviews/2026-10-12-method-type-corrections.md. Conflicting source claim: `"[\"conventional_pipeline\"]"`. Claim record status: source_checked. Field: `facets.method_types` Claim: metadata-correction-tags-20261012-93b102404ea71843e536 Source artifact SHA-256: `2071ac2487d56df4150109b944a42944ed12e1398d00899c054580f709921317` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release history

Protein composition + fixed ridge probe: report · Original source · 1663d1f04b2bbd6dfcff77fea78129d30b0de191
Protein composition + fixed ridge probe: audit · Original source · 1663d1f04b2bbd6dfcff77fea78129d30b0de191

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Technical metadata and extraction receipts

Stable ID: rewire-local-20260921-configuration-composition22

areas: proteins-complexes
method types: conventional_pipeline
source locator: model; model_configuration; protocol_configuration.embedding_probe; execution
configuration: alphabet: ACDEFGHIKLMNPQRSTVWY; baseline id: protein-composition-probe-v1; baseline version: 1; features: log1p length, residue fractions, unknown fraction; head: protocol-owned alpha-10 ridge
model: name: Protein composition + fixed ridge probe; training overlap: protocol-permitted training only; no pretraining
environment: architecture: arm64; container digest: unreported; container runtime: unreported; platform: macOS-26.6.2-arm64-arm-64bit; python: 3.11.13; rewirebench: 0.4.0; sdk code sha256: 9350e367b20ec48d9ce1195cb5b73c4bd98ce8530a2d1f7ba2157fc8be75fa34; sif sha256: unreported
training overlap: protocol-permitted training only; no pretraining
method role: simple statistical baseline

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