Configuration

Sequence composition + RidgeCV (mRNABench Sample designed MRL)

No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation.

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Evaluations and results

1 evaluation · 3 results. Different protocols are not a single leaderboard.

Protocol: mRNABench Sample designed MRL · Dataset subset: mRNABench Sample designed MRL test subset

Sorted by MSE (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	MSE	Pearson	Spearman
Sequence composition + RidgeCV (mRNABench Sample designed MRL)Evaluation	1.91	0.437	0.495

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Sequence composition + RidgeCV (mRNABench Sample designed MRL)	Protocol: mRNABench Sample designed MRL Dataset subset: mRNABench Sample designed MRL test subset	1.91 MSE unitless · lower Uncertainty: Not reported by the source: Not estimated; one complete selected evaluation. Coverage: 15003/15003 scored	Rewire evaluation · Source checked Methods, coverage and source Sequence composition + RidgeCV on mRNABench Sample designed MRL mRNABench Sample designed MRL Aggregation: Not reported Sequence composition + RidgeCV: local execution report (20 September 2026); Sequence composition + RidgeCV: automated execution audit · metrics.mse
Configuration: Sequence composition + RidgeCV (mRNABench Sample designed MRL)	Protocol: mRNABench Sample designed MRL Dataset subset: mRNABench Sample designed MRL test subset	0.437 Pearson unitless · higher Uncertainty: Not reported by the source: Not estimated; one complete selected evaluation. Coverage: 15003/15003 scored	Rewire evaluation · Source checked Methods, coverage and source Sequence composition + RidgeCV on mRNABench Sample designed MRL mRNABench Sample designed MRL Aggregation: Not reported Sequence composition + RidgeCV: local execution report (20 September 2026); Sequence composition + RidgeCV: automated execution audit · metrics.pearson
Configuration: Sequence composition + RidgeCV (mRNABench Sample designed MRL)	Protocol: mRNABench Sample designed MRL Dataset subset: mRNABench Sample designed MRL test subset	0.495 Spearman unitless · higher Uncertainty: Not reported by the source: Not estimated; one complete selected evaluation. Coverage: 15003/15003 scored	Rewire evaluation · Source checked Methods, coverage and source Sequence composition + RidgeCV on mRNABench Sample designed MRL mRNABench Sample designed MRL Aggregation: Not reported Sequence composition + RidgeCV: local execution report (20 September 2026); Sequence composition + RidgeCV: automated execution audit · metrics.spearman

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

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Sequence composition + RidgeCV: local execution report (20 September 2026) · Original source · ca73fa47136d182f2d4ddb083d084712198fc0e2

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Technical metadata and extraction receipts

Stable ID: rewire-local-20260920-configuration-mrnabench-composition

areas: rna-transcriptomes
source locator: model; model_configuration; execution; environment
configuration: alphas: 0.001; 0.01; 0.1; 1; 10; features: log1p length, A/C/G/T fractions, unknown fraction; normalization: none; selection: RidgeCV within training only; split seed: 2541; validation used: false
model: name: Sequence composition + RidgeCV (Rewire control); training overlap: No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation.
environment: architecture: arm64; container digest: unreported; container runtime: unreported; platform: macOS-26.6.2-arm64-arm-64bit; python: 3.11.13; rewirebench: 0.4.0; sdk code sha256: fcc5ab65e6753cf29aabbdae231cbb5cdf72a3dd40ba8f109802c33223b33536; sif sha256: unreported
packages: numpy: 1.26.4; pandas: 2.3.3; pyarrow: 23.0.1; rewirebench: 0.4.0; scikit-learn: 1.8.0; scipy: 1.15.3
method role: procedural control
training overlap: No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation.

Related records

system: Sequence composition + RidgeCV on mRNABench Sample designed MRL
implemented by: Sequence composition + RidgeCV (mRNABench Sample designed MRL) comparator role

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