Amino-acid composition + fixed ridge (FLIP2 Rhomax by_wild_type)
No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation.
Overview
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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
1 evaluation · 2 results. Different protocols are not a single leaderboard.
Protocol: FLIP2 Rhomax by_wild_type · Dataset subset: FLIP2 Rhomax by_wild_type test subset
Sorted by NDCG (cutoff not stated) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | NDCG (cutoff not stated) | Spearman |
|---|---|---|
| Amino-acid composition + fixed ridge (FLIP2 Rhomax by_wild_type)Evaluation | 0.955 | 0.418 |
All 2 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Amino-acid composition + fixed ridge (FLIP2 Rhomax by_wild_type) | Protocol: FLIP2 Rhomax by_wild_type Dataset subset: FLIP2 Rhomax by_wild_type test subset | 0.955 NDCG (cutoff not stated) unitless · higher Uncertainty: Not reported by the source: Not estimated; one complete selected evaluation. Coverage: 184/184 scored | Rewire evaluation · Source checkedMethods, coverage and sourceAmino-acid composition + fixed ridge on FLIP2 Rhomax by_wild_type FLIP2 Rhomax by_wild_type Aggregation: Not reported Amino-acid composition + fixed ridge: local execution report (20 September 2026); Amino-acid composition + fixed ridge: automated execution audit · metrics.ndcg |
| Configuration: Amino-acid composition + fixed ridge (FLIP2 Rhomax by_wild_type) | Protocol: FLIP2 Rhomax by_wild_type Dataset subset: FLIP2 Rhomax by_wild_type test subset | 0.418 Spearman unitless · higher Uncertainty: Not reported by the source: Not estimated; one complete selected evaluation. Coverage: 184/184 scored | Rewire evaluation · Source checkedMethods, coverage and sourceAmino-acid composition + fixed ridge on FLIP2 Rhomax by_wild_type FLIP2 Rhomax by_wild_type Aggregation: Not reported Amino-acid composition + fixed ridge: local execution report (20 September 2026); Amino-acid composition + fixed ridge: automated execution audit · metrics.spearman |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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How it works, versions and access
Additional methodological details, versions and access terms have not yet been extracted into a structured profile for this configuration. Consult the linked sources and evaluation records below.
Evidence
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Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
Facets: method types1 values
| Amino-acid composition + fixed ridge: local execution report (20 September 2026) Fixed training-mean and composition-ridge probes (record descriptions) Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | conflicting claim ["automated-source-review"] · 2026-10-12 Audit detailsCorrect the method type from none to conventional_pipeline (use-case baseline review 2026-10-12, table 2). Evidence from docs/reviews/use-cases/baselines-2026-10-12.md. Independent review 2026-10-12: approved. See docs/reviews/2026-10-12-method-type-corrections.md. Conflicting source claim: Field: Claim: metadata-correction-tags-20261012-8760e26871864b211e2d Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- Amino-acid composition + fixed ridge: local execution report (20 September 2026) · Original source · ca73fa47136d182f2d4ddb083d084712198fc0e2
Technical metadata and extraction receipts
Stable ID: rewire-local-20260920-configuration-flip2-composition
- areas
- proteins-complexes
- method types
- conventional_pipeline
- source locator
- model; model_configuration; execution; environment
- configuration
- alpha: 10; features: 40 amino-acid fractions; second component zero for Rhomax; fit intercept: true; target scaling: training-only StandardScaler; validation used: false
- model
- name: Amino-acid composition + fixed ridge (Rewire control); training overlap: No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation.
- environment
- architecture: arm64; container digest: unreported; container runtime: unreported; platform: macOS-26.6.2-arm64-arm-64bit; python: 3.11.13; rewirebench: 0.4.0; sdk code sha256: fcc5ab65e6753cf29aabbdae231cbb5cdf72a3dd40ba8f109802c33223b33536; sif sha256: unreported
- packages
- numpy: 1.26.4; pandas: 2.3.3; pyarrow: 23.0.1; rewirebench: 0.4.0; scikit-learn: 1.8.0; scipy: 1.15.3
- method role
- procedural control
- training overlap
- No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation.