Configuration

AlphaFold2

Protein model evaluated by the ProteinBench authors under their harness.

Overview

Protein model evaluated by the ProteinBench authors under their harness.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

14 evaluations · 14 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-GDT-TS-MEAN: Accuracy GDT-TS (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.86 gdt-ts_mean score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-GDT-TS-MEAN: Accuracy GDT-TS (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy GDT-TS ↑)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-GDT-TS-MEDIAN: Accuracy GDT-TS (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.921 gdt-ts_median score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-GDT-TS-MEDIAN: Accuracy GDT-TS (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy GDT-TS ↑)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-LDDT-MEAN: Accuracy lDDT (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.904 lddt_mean score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-LDDT-MEAN: Accuracy lDDT (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy lDDT ↑)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-LDDT-MEDIAN: Accuracy lDDT (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.933 lddt_median score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-LDDT-MEDIAN: Accuracy lDDT (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy lDDT ↑)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-RMSD-MEAN: Accuracy RMSD (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	3.21 rmsd_mean score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-RMSD-MEAN: Accuracy RMSD (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy RMSD ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	1.64 rmsd_median score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy RMSD ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-TM-SCORE-MEAN: Accuracy TM-score (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.871 tm-score_mean score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-TM-SCORE-MEAN: Accuracy TM-score (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy TM-score ↑)
Configuration: AlphaFold2	Task: ProteinBench FOLD-ACCURACY-TM-SCORE-MEDIAN: Accuracy TM-score (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.952 tm-score_median score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-ACCURACY-TM-SCORE-MEDIAN: Accuracy TM-score (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Accuracy TM-score ↑)
Configuration: AlphaFold2	Task: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0% ca-break_mean percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality CA break (%) ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-QUALITY-CA-BREAK-MEDIAN: Quality CA break (%) (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0% ca-break_median percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEDIAN: Quality CA break (%) (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality CA break (%) ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-QUALITY-CA-CLASH-MEAN: Quality CA clash (%) (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0.3% ca-clash_mean percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-QUALITY-CA-CLASH-MEAN: Quality CA clash (%) (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality CA clash (%) ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-QUALITY-CA-CLASH-MEDIAN: Quality CA clash (%) (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	0% ca-clash_median percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-QUALITY-CA-CLASH-MEDIAN: Quality CA clash (%) (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality CA clash (%) ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-QUALITY-PEPBOND-BREAK-MEAN: Quality PepBond break (%) (mean) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	4.8% pepbond-break_mean percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-QUALITY-PEPBOND-BREAK-MEAN: Quality PepBond break (%) (mean) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality PepBond break (%) ↓)
Configuration: AlphaFold2	Task: ProteinBench FOLD-QUALITY-PEPBOND-BREAK-MEDIAN: Quality PepBond break (%) (median) Dataset subset: CAMEO2022, 183 proteins (ProteinBench split)	4.1% pepbond-break_median percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source AlphaFold2 on ProteinBench FOLD-QUALITY-PEPBOND-BREAK-MEDIAN: Quality PepBond break (%) (median) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Aggregation: Not reported proteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality PepBond break (%) ↓)

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