Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
Pfam
Pfam as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Sources
Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column ACC (%); XML row6 column2Overview
Key specifications have not been extracted for this record. See the linked evaluation and sources for the reported setup.
limited source coverage · Automated source review, 2026-09-17. All specifications and missing details
Evaluations and results
1 evaluation · 8 results. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 62% ACC (%) percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column ACC (%); XML row6 column2 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 0.352 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column MCC; XML row6 column7 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 56.9% PRE (%) percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column PRE (%); XML row6 column3 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 0.722 F1 dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column F1; XML row6 column6 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 74.6% FPR (%) percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column FPR (%); XML row6 column5 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 98.6% REC (%) percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column REC (%); XML row6 column4 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | – AUROC unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column AUROC; XML row6 column8 |
| Configuration: Pfam | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | – AUPR dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePfam: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column AUPR; XML row6 column9 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
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How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Sources
Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row Pfam, column ACC (%); XML row6 column2Strengths, limitations and unresolved questions
Strengths and limitations
Limitations and conditions
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Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-4797577fdd8f8284a6Specifications
Inputs, training, access and other details
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Model type | Not extracted or verified for this record. |
| Inputs | Not extracted or verified for this record. |
| Outputs | Not extracted or verified for this record. |
| Parameters | Not extracted or verified for this record. |
| Known versions | Not extracted or verified for this record. |
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| Context limits | Not extracted or verified for this record. |
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| Code licence | Not extracted or verified for this record. |
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Evidence
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Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1, row Pfam, column ACC (%); XML row6 column2 Version: PMC11609699.1 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction Pfam as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1, row Pfam, column ACC (%); XML row6 column2 Version: PMC11609699.1 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
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Release 2026-09-29-06401fd5b220 · Record review: needs review
1 source records and release history
- Enhanced prediction of protein functional identity through the integration of sequence and structural features · Original source · PMC11609699.1
Technical metadata and extraction receipts
Stable ID: paper-model-4797577fdd8f8284a6
- areas
- proteins-complexes
- tasks
- Enzyme functional identity prediction
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-fujisan-2024; source locator: Table 1, row Pfam, column ACC (%); XML row6 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.