Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)
Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu as run in Table 1.
Overview
Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu as run in Table 1.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
6 evaluations · 30 results. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: DeepVariant execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 20.9 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepVariant on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-deepvariant Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 8 (GCP, GPU8, DeepVariant), column 'Cost ($)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: DeepVariant execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 36.5% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepVariant on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-deepvariant Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 8 (GCP, GPU8, DeepVariant), column '% cost-savings' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: DeepVariant execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 42.6 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepVariant on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-deepvariant Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 8 (GCP, GPU8, DeepVariant), column 'Time (min)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: DeepVariant execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 0.71 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepVariant on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-deepvariant Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 8 (GCP, GPU8, DeepVariant), column 'Time (h)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: DeepVariant execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 26.5 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepVariant on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-deepvariant Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 8 (GCP, GPU8, DeepVariant), column 'Fold acceleration' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: HaplotypeCaller execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 17.5 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHaplotypeCaller on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-haplotypecaller Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 19 (GCP, GPU8, HaplotypeCaller), column 'Cost ($)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: HaplotypeCaller execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 74.2% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHaplotypeCaller on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-haplotypecaller Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 19 (GCP, GPU8, HaplotypeCaller), column '% cost-savings' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: HaplotypeCaller execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 35.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHaplotypeCaller on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-haplotypecaller Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 19 (GCP, GPU8, HaplotypeCaller), column 'Time (min)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: HaplotypeCaller execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 0.59 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHaplotypeCaller on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-haplotypecaller Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 19 (GCP, GPU8, HaplotypeCaller), column 'Time (h)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: HaplotypeCaller execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: HG002 (GIAB) WGS FASTQ down-sampled to 30x, precisionFDA Truth Challenge V2 | 65.8 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHaplotypeCaller on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-haplotypecaller Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 19 (GCP, GPU8, HaplotypeCaller), column 'Fold acceleration' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 30.1 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 30 (GCP, GPU8, LoFreq), column 'Cost ($)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | − 271% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 30 (GCP, GPU8, LoFreq), column '% cost-savings' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 61.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 30 (GCP, GPU8, LoFreq), column 'Time (min)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 1.02 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 30 (GCP, GPU8, LoFreq), column 'Time (h)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 4.5 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 30 (GCP, GPU8, LoFreq), column 'Fold acceleration' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 14 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 41 (GCP, GPU8, Muse), column 'Cost ($)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 22.9% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 41 (GCP, GPU8, Muse), column '% cost-savings' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 28.5 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 41 (GCP, GPU8, Muse), column 'Time (min)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 0.48 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 41 (GCP, GPU8, Muse), column 'Time (h)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 21.8 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 41 (GCP, GPU8, Muse), column 'Fold acceleration' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 15.2 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 52 (GCP, GPU8, Mutect2), column 'Cost ($)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | − 7.06% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 52 (GCP, GPU8, Mutect2), column '% cost-savings' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 31 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 52 (GCP, GPU8, Mutect2), column 'Time (min)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 0.52 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 52 (GCP, GPU8, Mutect2), column 'Time (h)' |
| Configuration: Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 15.7 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 52 (GCP, GPU8, Mutect2), column 'Fold acceleration' |
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Sources and history
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
1 source records and release history
- Accelerating genomic workflows using NVIDIA Parabricks · Original source · BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML
Technical metadata and extraction receipts
Stable ID: model-execution-20261009-config-oconnell2023-gcp-a2-gpu8
- areas
- dna-genomes
- contexts
- clinical_research
- method types
- conventional_pipeline
- foundation model eligible
- false
- reported name
- Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu
- hardware
- description: GCP a2-highgpu: 8 NVIDIA A100, 96 vCPUs, 680 GB RAM
- source locator
- Table 1 VM-type column; Methods 'GCP configuration', 'AWS configuration', 'DGX configuration'
- version
- Parabricks v. 3.7.0-1
- protocol
- Parabricks Germline Pipeline, DeepVariant Germline Pipeline, mutectcaller, somaticsniper_workflow, muse or lofreq, by protocol
Related records
- configuration of: NVIDIA Parabricks
- system: DeepVariant on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)
- system: HaplotypeCaller on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)
- system: LoFreq on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)
- system: Muse on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)
- system: Mutect2 on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)
- system: SomaticSniper on Parabricks 3.7.0-1, 8 A100 GPUs on GCP a2-highgpu (O'Connell et al. 2023)