GPN_final_InnerProduct.minus.score (TraitGym)
GPN_final scored as 'negative inner product score' in TraitGym.
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Evaluations and results
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: GPN_final_InnerProduct.minus.score (TraitGym) | Protocol: TraitGym Mendelian traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Mendelian traits, matched 9 controls | 0.169 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.047496210894077816 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGPN_final_InnerProduct.minus.score on TraitGym mendelian_traits_matched_9 lit-genomics-20261011-traitgym-protocol-mendelian-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_InnerProduct.minus.score.csv, column 'score' (standard error in column 'se') |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · Original source · Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-traitgym-config-gpn-final-innerproduct-minus-score
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- reported name
- GPN_final_InnerProduct.minus.score
- foundation model eligible
- true
- parameters
- GPN-Promoter (the authors' model; 'GPN_final' in file names, named GPN-Promoter in config/models.csv); negative inner product score
- access reuse
- GPN-Promoter weights: see the GPN repository
- source locator
- File name 'GPN_final_InnerProduct.minus.score.csv'; config/models.csv; paper Table S5
- missing metadata
- version: reason: unreported; note: Only the label in the file name identifies the model
Related records
- configuration of: GPN
- system: GPN_final_InnerProduct.minus.score on TraitGym mendelian_traits_matched_9