GPN_final_EuclideanDistance.plus.score (TraitGym)
GPN_final scored as 'Euclidean distance score' in TraitGym.
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: GPN_final_EuclideanDistance.plus.score (TraitGym) | Protocol: TraitGym Mendelian traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Mendelian traits, matched 9 controls | 0.347 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.056745382840026094 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGPN_final_EuclideanDistance.plus.score on TraitGym mendelian_traits_matched_9 lit-genomics-20261011-traitgym-protocol-mendelian-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/GPN_final_EuclideanDistance.plus.score.csv, column 'score' (standard error in column 'se') |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
Use this configuration
How it works, versions and access
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
0 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|
No evidence rows match these filters. Choose another scope or clear the search.
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · Original source · Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-traitgym-config-gpn-final-euclideandistance-plus-score
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- reported name
- GPN_final_EuclideanDistance.plus.score
- foundation model eligible
- true
- parameters
- GPN-Promoter (the authors' model; 'GPN_final' in file names, named GPN-Promoter in config/models.csv); Euclidean distance score
- access reuse
- GPN-Promoter weights: see the GPN repository
- source locator
- File name 'GPN_final_EuclideanDistance.plus.score.csv'; config/models.csv; paper Table S5
- missing metadata
- version: reason: unreported; note: Only the label in the file name identifies the model
Related records
- configuration of: GPN
- system: GPN_final_EuclideanDistance.plus.score on TraitGym mendelian_traits_matched_9