Configuration

Naïve Conseq. Type (evaluation mode not printed (Table 4 has no Eval. column), GUANinE v1.1)

Naïve Conseq. Type, a configuration of Naive VEP consequence baseline: Regime B (non-neural baseline); context column 'dash (not applicable)'.

1 evaluation · 1 result

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Naïve Conseq. Type (evaluation mode not printed (Table 4 has no Eval. column), GUANinE v1.1)	Protocol: GUANinE v1.1 clinvar-snv, Spearman rho x100 (Table 4) Dataset: GUANinE clinvar-snv test set	76.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Naïve Conseq. Type on GUANinE clinvar-snv lit-genomics-20261011-guanine-protocol-clinvar-snv Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 4, row 'Naïve Conseq. Type', column 'clinvar-snv' (ρ)

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Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

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GUANinE v1.1 reveals complementarity of supervised and genomic language models · Original source · Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-guanine-config-naive-conseq-type-mode-unprinted

areas: dna-genomes
contexts: research
method types: conventional_pipeline
reported name: Naïve Conseq. Type
foundation model eligible: false
parameters: Regime B (non-neural baseline); evaluation evaluation mode not printed (Table 4 has no Eval. column); context column 'dash (not applicable)'
source locator: Table 4 row 'Naïve Conseq. Type', columns Reg., Eval. and Context
access reuse: Not stated in the source; see the model's own release
missing metadata: version: reason: unreported; note: Only the printed row label identifies the checkpoint
provenance note: Naïve Conseq. Type as evaluated in GUANinE v1.1.

Related records

configuration of: Naive VEP consequence baseline
system: Naïve Conseq. Type on GUANinE clinvar-snv

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