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Omni-DNA-1B

Genomic foundation model evaluated by the GENEB authors with frozen embeddings and a probe.

Overview

Genomic foundation model evaluated by the GENEB authors with frozen embeddings and a probe.

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Evaluations and results

2 evaluations · 2 results. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Omni-DNA-1B	Task: GENEB LINEAR-PROBE: Average macro-MCC across the 13 representative tasks, linear probe Dataset subset: GENEB representative task subset (GENEB split)	0.55 macro_mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Omni-DNA-1B on GENEB LINEAR-PROBE: Average macro-MCC across the 13 representative tasks, linear probe Frozen embeddings scored with a probe over the thirteen representative tasks, one from each functional category (Table 7). Aggregation: Not reported GENEB: Why Genomic Models Are Hard to Compare · Table 8, row(Omni-DNA-1B), column(Linear MCC)
Configuration: Omni-DNA-1B	Task: GENEB MLP-PROBE: Average macro-MCC across the 13 representative tasks, MLP probe Dataset subset: GENEB representative task subset (GENEB split)	0.542 macro_mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Omni-DNA-1B on GENEB MLP-PROBE: Average macro-MCC across the 13 representative tasks, MLP probe Frozen embeddings scored with a probe over the thirteen representative tasks, one from each functional category (Table 7). Aggregation: Not reported GENEB: Why Genomic Models Are Hard to Compare · Table 8, row(Omni-DNA-1B), column(MLP MCC)

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