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GENA-LM (fine-tuned)

GENA-LM (fine-tuned): DNA language model.

22 evaluations · 22 results

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

22 evaluations · 22 results. Different protocols are not a single leaderboard.

Sorted by AUROC (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configurationProtocol and datasetAUROCSpearmanAccuracyPearsonPaired accuracy
GENA-LM (fine-tuned)EvaluationDART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.961 (best in column)Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.942Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.923Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.911Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.91Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.908Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.887Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.878Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.877Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CTS-K562: Cell-type-specific element classification, K562, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)0.862Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval VS-YORUBAN-AUROC: Variant scoring on DNase QTLs in Yoruban LCLs, AUROC, DNase QTLs in Yoruban LCLs (DART-Eval split)0.628Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC, Chromatin QTLs in African LCLs (DART-Eval split)0.604Not reportedNot reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)Not reported0.467Not reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)Not reported0.696 (best in column)Not reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)Not reported0.439Not reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)Not reported0.421Not reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)Not reported0.532Not reportedNot reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy, ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)Not reportedNot reported0.636Not reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval REI-ABS: Regulatory element identification, absolute accuracy, ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)Not reportedNot reported0.909 (best in column)Not reportedNot reported
GENA-LM (fine-tuned)EvaluationDART-Eval REI-PAIR: Regulatory element identification, paired accuracy, ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)Not reportedNot reportedNot reportedNot reported0.972
GENA-LM (fine-tuned)EvaluationDART-Eval VS-AFRICAN-PEARSON_R: Variant scoring on Chromatin QTLs in African LCLs, Pearson r, Chromatin QTLs in African LCLs (DART-Eval split)Not reportedNot reportedNot reported0.201Not reported
GENA-LM (fine-tuned)EvaluationDART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r, DNase QTLs in Yoruban LCLs (DART-Eval split)Not reportedNot reportedNot reported0.414 (best in column)Not reported
All 22 result rows with coverage, uncertainty and sources
Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.908 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives

Separating positive GM12878 peaks from matched negatives.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-AUROC-GM12878)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.942 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives

Separating positive H1ESC peaks from matched negatives.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-AUROC-H1ESC)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.878 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives

Separating positive HEPG2 peaks from matched negatives.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-AUROC-HEPG2)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.961 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives

Separating positive IMR90 peaks from matched negatives.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-AUROC-IMR90)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.91 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives

Separating positive K562 peaks from matched negatives.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-AUROC-K562)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.467 Spearman
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only

Rank correlation with measured accessibility among positive GM12878 peaks.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-GM12878)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.696 Spearman
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only

Rank correlation with measured accessibility among positive H1ESC peaks.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-H1ESC)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.439 Spearman
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only

Rank correlation with measured accessibility among positive HEPG2 peaks.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-HEPG2)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.421 Spearman
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only

Rank correlation with measured accessibility among positive IMR90 peaks.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-IMR90)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.532 Spearman
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only

Rank correlation with measured accessibility among positive K562 peaks.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-K562)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.636 Accuracy
fraction · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy

Classify which of five cell lines a accessible element belongs to.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned GENA-LM), column(CTS-ACC)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.877 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878

One-against-rest AUROC for GM12878 accessible elements.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned GENA-LM), column(CTS-GM12878)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.923 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC

One-against-rest AUROC for H1ESC accessible elements.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned GENA-LM), column(CTS-H1ESC)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.887 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2

One-against-rest AUROC for HEPG2 accessible elements.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned GENA-LM), column(CTS-HEPG2)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.911 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90

One-against-rest AUROC for IMR90 accessible elements.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned GENA-LM), column(CTS-IMR90)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval CTS-K562: Cell-type-specific element classification, K562
Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
0.862 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562

One-against-rest AUROC for K562 accessible elements.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned GENA-LM), column(CTS-K562)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval REI-ABS: Regulatory element identification, absolute accuracy
Dataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)
0.909 Accuracy
fraction · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval REI-ABS: Regulatory element identification, absolute accuracy

Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(GENA-LM), column(fine-tuned absolute_accuracy)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
Dataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)
0.972 Paired accuracy
fraction · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy

Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(GENA-LM), column(fine-tuned paired_accuracy)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
Dataset subset: Chromatin QTLs in African LCLs (DART-Eval split)
0.604 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC

Score the effect of a variant on chromatin accessibility, against the measured QTL call.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African GENA-LM), column(fine-tuned auroc)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval VS-AFRICAN-PEARSON_R: Variant scoring on Chromatin QTLs in African LCLs, Pearson r
Dataset subset: Chromatin QTLs in African LCLs (DART-Eval split)
0.201 Pearson
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval VS-AFRICAN-PEARSON_R: Variant scoring on Chromatin QTLs in African LCLs, Pearson r

Score the effect of a variant on chromatin accessibility, against the measured QTL call.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African GENA-LM), column(fine-tuned pearson_r)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval VS-YORUBAN-AUROC: Variant scoring on DNase QTLs in Yoruban LCLs, AUROC
Dataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split)
0.628 AUROC
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval VS-YORUBAN-AUROC: Variant scoring on DNase QTLs in Yoruban LCLs, AUROC

Score the effect of a variant on chromatin accessibility, against the measured QTL call.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban GENA-LM), column(fine-tuned auroc)
Configuration: GENA-LM (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
Dataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split)
0.414 Pearson
unitless · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENA-LM (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r

Score the effect of a variant on chromatin accessibility, against the measured QTL call.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban GENA-LM), column(fine-tuned pearson_r)

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Stable ID: dart-eval-method-gena-lm-fine-tuned

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dna-genomes
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Table 1, row(GENA-LM)
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provenance note
DNA language model evaluated by the DART-Eval authors in the fine-tuned setting.
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