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Caduceus (zero-shot likelihood)

DNA language model evaluated by the DART-Eval authors in the zero-shot likelihood setting.

2 evaluations · 2 results

Overview

DNA language model evaluated by the DART-Eval authors in the zero-shot likelihood setting.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

2 evaluations · 2 results. Different protocols are not a single leaderboard.

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Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Caduceus (zero-shot likelihood)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
Dataset subset: Chromatin QTLs in African LCLs (DART-Eval split)
0.525 auroc
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Caduceus (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC

Score the effect of a variant on chromatin accessibility, against the measured QTL call.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Caduceus), column(zero-shot likelihood auroc)
Configuration: Caduceus (zero-shot likelihood)Task: DART-Eval VS-YORUBAN-AUROC: Variant scoring on DNase QTLs in Yoruban LCLs, AUROC
Dataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split)
0.443 auroc
fraction · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Caduceus (zero-shot likelihood) on DART-Eval VS-YORUBAN-AUROC: Variant scoring on DNase QTLs in Yoruban LCLs, AUROC

Score the effect of a variant on chromatin accessibility, against the measured QTL call.

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Caduceus), column(zero-shot likelihood auroc)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

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Evidence

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Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: dart-eval-method-caduceus-zero-shot-likelihood

areas
dna-genomes
source locator
Table 1, row(Caduceus)
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