Manta (Gabrielaite et al. WGS)
Manta as run in the cited comparison.
Overview
Manta as run in the cited comparison.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
1 evaluation · 2 results. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Manta (Gabrielaite et al. WGS) | Protocol: NA12878 WGS CNV recall and precision, 1 bp overlap (Gabrielaite et al. Table S2) Dataset: NA12878 WGS with the Haraksingh et al. 2017 gold-standard CNV set | 0.326 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcecnv-20261009-protocol-gabrielaite2021-na12878-wgs-overlap Aggregation: Not reported A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data; Gabrielaite et al. 2021, Table S2 (precision and recall of CNV calling tools) · Table S2.xlsx, sheet Supplementary_table2, K340; sample GB-WGS-NA12878; tool Manta; column precision |
| Configuration: Manta (Gabrielaite et al. WGS) | Protocol: NA12878 WGS CNV recall and precision, 1 bp overlap (Gabrielaite et al. Table S2) Dataset: NA12878 WGS with the Haraksingh et al. 2017 gold-standard CNV set | 0.875 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcecnv-20261009-protocol-gabrielaite2021-na12878-wgs-overlap Aggregation: Not reported A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data; Gabrielaite et al. 2021, Table S2 (precision and recall of CNV calling tools) · Table S2.xlsx, sheet Supplementary_table2, L340; sample GB-WGS-NA12878; tool Manta; column recall |
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Evidence
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Evidence table
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Sources and history
Release 2026-10-09-8eac2440869c · Record review: source checked
2 source records and release history
- A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data · Original source · Cancers 13(24):6283, published 2021-12-14; PMC8699073 full-text XML
- Gabrielaite et al. 2021, Table S2 (precision and recall of CNV calling tools) · Original source · Supplementary Materials/Table S2.xlsx inside cancers-13-06283-s001.zip
Technical metadata and extraction receipts
Stable ID: cnv-20261009-config-gabrielaite2021-manta
- areas
- dna-genomes
- contexts
- clinical_research
- method types
- conventional_pipeline
- reported name
- Manta
- missing metadata
- version: reason: unreported; note: Unreported in the article methods
- foundation model eligible
- false
Related records
- configuration of: Manta
- system: Manta on NA12878 WGS