Configuration

Ensemble scCello + UCE (Wu et al. 2025)

Ensemble of OnClass classifiers: scCello + UCE.

Overview

Ensemble of OnClass classifiers: scCello + UCE.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

2 evaluations · 4 results. Different protocols are not a single leaderboard.

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Ensemble scCello + UCE (Wu et al. 2025)	Protocol: Cross-atlas annotation transfer, HLCA to Tabula Sapiens, 14 shared cell types (Wu et al. 2025 Table S3) Dataset: Tabula Sapiens (CELLxGENE), 120 leaf cell types after processing	0.852 top-1-accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source UCE + scCello: HLCA to Tabula Sapiens transfer (Wu et al. 2025) cell-type-20261009-protocol-wu2025-hlca-to-ts Aggregation: Not reported Wu et al. 2025, Additional file 3 (Supplementary Tables S1-S13) · Table S3, cell B25, row 'UCE + scCello', column 'Accuracy@1'
Configuration: Ensemble scCello + UCE (Wu et al. 2025)	Protocol: Cross-atlas annotation transfer, HLCA to Tabula Sapiens, 14 shared cell types (Wu et al. 2025 Table S3) Dataset: Tabula Sapiens (CELLxGENE), 120 leaf cell types after processing	0.303 macro-f1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source UCE + scCello: HLCA to Tabula Sapiens transfer (Wu et al. 2025) cell-type-20261009-protocol-wu2025-hlca-to-ts Aggregation: Not reported Wu et al. 2025, Additional file 3 (Supplementary Tables S1-S13) · Table S3, cell C25, row 'UCE + scCello', column 'Macro-F1'
Configuration: Ensemble scCello + UCE (Wu et al. 2025)	Protocol: Cross-atlas annotation transfer, Tabula Sapiens to HLCA, 14 shared cell types (Wu et al. 2025 Table S2) Dataset: HLCA core (CELLxGENE), 37 leaf cell types after processing	0.736 top-1-accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source UCE + scCello: Tabula Sapiens to HLCA transfer (Wu et al. 2025) cell-type-20261009-protocol-wu2025-ts-to-hlca Aggregation: Not reported Wu et al. 2025, Additional file 3 (Supplementary Tables S1-S13) · Table S2, cell B18, row 'UCE + scCello', column 'Accuracy@1'
Configuration: Ensemble scCello + UCE (Wu et al. 2025)	Protocol: Cross-atlas annotation transfer, Tabula Sapiens to HLCA, 14 shared cell types (Wu et al. 2025 Table S2) Dataset: HLCA core (CELLxGENE), 37 leaf cell types after processing	0.126 macro-f1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source UCE + scCello: Tabula Sapiens to HLCA transfer (Wu et al. 2025) cell-type-20261009-protocol-wu2025-ts-to-hlca Aggregation: Not reported Wu et al. 2025, Additional file 3 (Supplementary Tables S1-S13) · Table S2, cell C18, row 'UCE + scCello', column 'Macro-F1'

Source checking is not independent reproduction. Release 2026-10-10-6e93f504adfc.

Use this model

How it works, versions and access

Strengths, limitations and unresolved questions

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

0 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-6e93f504adfc
Property and statement	Original source and location	Review and provenance

No evidence rows match these filters. Choose another scope or clear the search.

All evidence (JSONL) (gzip)How to read the evidence

Sources and history

Release 2026-10-10-6e93f504adfc · Record review: source checked

2 source records and release history

Biology-driven insights into the power of single-cell foundation models · Original source · Genome Biology 26:334, published 2025-10-03; PMC12492631 full-text XML
Wu et al. 2025, Additional file 3 (Supplementary Tables S1-S13) · Original source · 13059_2025_3781_MOESM3_ESM.xlsx (38,926 bytes), as linked from the article XML <supplementary-material id="MOESM3">

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: cell-type-20261009-config-wu2025-ensemble-sccello-uce

areas: cells-tissues
contexts: research
method types: foundation_model
reported name: scCello + UCE
source locator: Supplementary Tables S2-S3 column 'Model' Results 'Cross-dataset validation' paragraphs 3-4
foundation model eligible: true
parameters: Sum of the output logits of the scCello and UCE OnClass classifiers, then softmax
missing metadata: version: reason: inapplicable; note: An ensemble of the listed configurations

Related records

configuration of: Ensemble of scFM embedding classifiers
uses model: scCello
uses model: UCE (Universal Cell Embeddings)
system: UCE + scCello: HLCA to Tabula Sapiens transfer (Wu et al. 2025)
system: UCE + scCello: Tabula Sapiens to HLCA transfer (Wu et al. 2025)

Suggest a correction