BASSET
Specialist published model that the BEND authors compare against on this task, not a language model embedding.
Overview
Specialist published model that the BEND authors compare against on this task, not a language model embedding.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
3 evaluations · 3 results. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: BASSET | Task: BEND CHROMATIN: Chromatin accessibility Dataset subset: ENCODE chromatin accessibility (BEND split) | 0.85 auroc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceBASSET on BEND CHROMATIN: Chromatin accessibility A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Chromatin accessibility) |
| Configuration: BASSET | Task: BEND CPG: CpG methylation Dataset subset: ENCODE CpG methylation (BEND split) | 0.93 auroc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceBASSET on BEND CPG: CpG methylation A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(CpG methylation) |
| Configuration: BASSET | Task: BEND HISTONE: Histone modification Dataset subset: ENCODE histone modification (BEND split) | 0.74 auroc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceBASSET on BEND HISTONE: Histone modification A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Histone modification) |
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Evidence
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Sources and history
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Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: bend-method-basset
- areas
- dna-genomes
- source locator
- Table 3, row(Expert method), column(Chromatin accessibility)
- missing metadata
- checkpoint revision: unreported; parameters: unextracted